New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 26029450 (0.780)3 (0.050) 3/238 NT 6.0% intergenic (‑408/‑165) USA300HOU_0232/pfl iron (Fe3+) ABC superfamily ATP binding cassette transporter, membrane/binding protein/formate C‑acetyltransferase
?CP000730 = 260312 49 (0.830)intergenic (‑426/‑147) USA300HOU_0232/pfl iron (Fe3+) ABC superfamily ATP binding cassette transporter, membrane/binding protein/formate C‑acetyltransferase

AAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTATGAAAACGTTAACATAGCATTTCAAATTCAC  >  CP000730/260175‑260446
                                                                                                                                             |                                                                                                                                      
aaaTCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTActg                                                                                                                                     >  1:568920‑M2/1‑138 (MQ=255)
 aaTCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTActgt                                                                                                                                    >  1:505311‑M2/1‑137 (MQ=255)
 aaTCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGAATATTAatgt                                                                                                                                    <  1:275238‑M2/141‑5 (MQ=255)
     tttCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTActgttaca                                                                                                                                >  1:461531‑M2/1‑133 (MQ=255)
       tCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTActgttacaca                                                                                                                              >  2:462013‑M2/1‑131 (MQ=255)
       tCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTActgttacaca                                                                                                                              >  2:462321‑M2/1‑131 (MQ=255)
          aaGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAAt                                                                                                                           <  2:276289/141‑1 (MQ=255)
           aGTGTTGATTTAACGCCTATCAACAATCATTTTTTATAAAGAAATATATATTCCTAAATTAACTTTTAAAACAATAAGAATAGAAAACATCATAACTGGTGTGTAACAGAAG‑‑GAAAGAAGCATATTACTAATACACaaaaa                                                                                                                          >  1:381563/1‑139 (MQ=255)
             tgtTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAg                                                                                                                        <  1:443145/141‑1 (MQ=255)
              gtTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGt                                                                                                                       >  1:403900/1‑141 (MQ=255)
              gtTGATTTAACGCTTAGCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGt                                                                                                                       >  1:456557/1‑141 (MQ=255)
               ttGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTa                                                                                                                      <  1:762333/141‑1 (MQ=255)
                tGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTAc                                                                                                                     <  1:434941/141‑1 (MQ=255)
                         gCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTAt                                                                                                            <  2:324156/141‑1 (MQ=255)
                           ttATCAACAATCATTTTTTATAAACAAATATATTCTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATACCTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGt                                                                                                          <  1:267322/141‑1 (MQ=255)
                           ttATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGt                                                                                                          <  2:571737/141‑1 (MQ=255)
                                aacaaTCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGTAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGa                                                                                                     >  2:565165/1‑141 (MQ=255)
                                  caaTCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGaca                                                                                                   >  2:103828/1‑141 (MQ=255)
                                  aaataatTTTTTATAAACAAATATATACTCCTAAATGAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTACCATATTAATGTTAGATAAATTAGTACAGGTTCGATTTTGGGaca                                                                                                   <  2:448955/140‑1 (MQ=255)
                                             tataAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTtgatg                                                                                        <  2:730515/141‑1 (MQ=255)
                                             tataAAAAAATATATTCCCCCAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTTGTGCGTGGCCTATGTTTTGACATACATTtgatg                                                                                        <  1:184055/141‑1 (MQ=255)
                                                aagcagggatataCTACTAAATTAACTTTTAAAGCAATCAAAATAGTGAACATTATAACTGTTGTGTACCAGAAT‑‑GCAATTAGCATATTACTCTTACACAAATGAGTACAGTTTCTATATTTTGACTAACAACTGATGaaa                                                                                     >  2:641579/9‑141 (MQ=255)
                                                aaaCAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGaaa                                                                                     <  1:56731/141‑1 (MQ=255)
                                                       tatataCTCCTAAATTAACTTTTAAATCAATTAAAATAGTAAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTAc                                                                              <  1:182317/141‑1 (MQ=255)
                                                           taCTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGTAATATGCTAATTGCATTtgttacacaacagttataatgttcactattttcattgctttaaaagttaatttaggagta                                                                             >  1:629436‑M2/1‑80 (MQ=255)
                                                           taCTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGTAATATGCTAATTGCATTtgttacacaacagttataatgttcactattttcattgctttaaaagttaatttaggagta                                                                             <  2:629436‑M2/140‑61 (MQ=255)
                                                           taCTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTAATGAAAATTGACCATaa                                                                          >  2:740407/1‑141 (MQ=255)
                                                                 tAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAtt                                                                    >  1:657825/1‑140 (MQ=255)
                                                                 tAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAtg                                                                    >  1:622675/1‑141 (MQ=255)
                                                                 tAAATTAACTTGTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAtg                                                                    <  2:593009/141‑1 (MQ=255)
                                                                      tAACTTTTAAAGAAATGAAAATAGTGAACATTATATCTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaa                                                               <  1:79267/141‑1 (MQ=255)
                                                                          ttttAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaaaaaa                                                           >  1:733320/1‑141 (MQ=255)
                                                                            ttAAAGCAATGAAAATAGTGAACATGATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATc                                                         <  2:36734/141‑1 (MQ=255)
                                                                                aGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTTCTGTTACACAAATTAGTACAGTTTTTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCacaa                                                     <  2:220920/141‑1 (MQ=255)
                                                                                aGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAACTTGTACATAATTTATGTAAAAAAAATCacaa                                                     >  2:747506/1‑141 (MQ=255)
                                                                                  cAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCacaaca                                                   <  1:54064/141‑1 (MQ=255)
                                                                                     tGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTAACATACATTAGATGAAAATTGTACATAATTTATAGGAAAATAATCACagcaaac                                                >  2:217765/1‑141 (MQ=255)
                                                                                       aaaaTAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACAt                                              >  2:340430/1‑141 (MQ=255)
                                                                                        aaaTAGTGAACATTATAACTTTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATg                                             <  1:668010/141‑1 (MQ=255)
                                                                                        aaaTAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATg                                             >  2:169284/1‑141 (MQ=255)
                                                                                         aaTAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGc                                            >  1:735993/1‑141 (MQ=255)
                                                                                            aGTGAACATTAGAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTAc                                         <  2:275238/141‑1 (MQ=255)
                                                                                              tGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACaa                                       <  1:70400/141‑1 (MQ=255)
                                                                                                     tataACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTAt                                <  1:565165/141‑1 (MQ=255)
                                                                                                        aaCTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTATGaa                             >  1:112119/1‑141 (MQ=255)
                                                                                                         aCTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTATGaaa                            <  2:55595/141‑1 (MQ=255)
                                                                                                          cTGTTGTGTAACAGAAT‑‑GTAATTAGCATATTActgttacacaacagttataatgttcactattttcattgctttaaaagttaatttaggagtatatatttgtttataaaaaatgattgttgataagcgttaaatcaacact                           >  2:381563‑M2/1‑32 (MQ=255)
                                                                                                            gttgtGTAACAGAAT‑‑GCCATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTATGAAAACg                         >  2:594469/1‑141 (MQ=255)
                                                                                                               gtgtAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTATGAAAACGTTa                      >  1:479814/1‑141 (MQ=255)
                                                                                                                 gtAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACACCAAACATGCTACAATGACTATGAAAACGTTAAc                    >  1:15089/1‑141 (MQ=255)
                                                                                                                 gtAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTATGAAAACGTTAAc                    <  2:78645/141‑1 (MQ=255)
                                                                                                                    aCAGTAT‑‑GCAAGTAGCATATTTCTGTTACACAAATTAGTACAGTTACCATGATGTGACATACATTTGATGAAAACTGTACATGATTTTTGTGAAAGAAATCACACAAAAAAAGCTACACAGAAGATGAAAAGGTTAACATa                 >  2:304037/1‑141 (MQ=255)
                                                                                                                    aCAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTATGAAAACGTTAActcc                 >  2:377878/1‑138 (MQ=255)
                                                                                                                    aCAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTATGAAAACGTTAACATa                 >  1:628697/1‑141 (MQ=255)
                                                                                                                     cAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAAAGACTATGAAAACGTTAAAATAg                >  1:134115/1‑141 (MQ=255)
                                                                                                                         aaT‑‑GCTATTAGTATATTACTGTTACATAATGTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACTTAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTATGAAAACGTTAACATAGCAt             <  2:74030/141‑1 (MQ=255)
                                                                                                                              gCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTATGAAAACGTTAACATAGCATTTc          >  2:647966/1‑141 (MQ=255)
                                                                                                                                  aTTAGCAGATTACTTTTACACAAATTAGGACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATTACAAGTATTACAGTACAATGACTATGAAAAAGTTAACATAGCATTTGaaa       >  2:538215/1‑141 (MQ=255)
                                                                                                                                     aGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTATGAAAACGTTAACATAGCATTTCAAATTc    >  2:20242/1‑141 (MQ=255)
                                                                                                                                       cATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTATGAAAACGTTAGCATACCATTTCAAATTcac  <  1:422897/141‑1 (MQ=255)
                                                                                                                                       aatatTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGACGAAAATTGTACATAATTTATGTGAAAAAAATCACCACAAAACTGCTACAAGGACTATGAAAACGTTAACATAGCATTTCAAATTcac  <  2:504325/140‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                      
AAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAAT‑‑GCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACTATGAAAACGTTAACATAGCATTTCAAATTCAC  >  CP000730/260175‑260446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.