mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 58 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP000730 | 1,929,812 | 0 | G | A | 69.4% | 60.3 / 34.7 | 50 | intergenic (‑895/‑273) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,842 | 0 | T | . | 66.2% | 80.9 / 114.1 | 72 | intergenic (‑925/‑243) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,848 | 0 | C | A | 66.2% | 55.0 / 74.3 | 72 | intergenic (‑931/‑237) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,867 | 0 | G | T | 65.7% | 71.1 / 62.4 | 72 | intergenic (‑950/‑218) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 35,970 | 0 | T | C | 65.6% | 331.5 / 265.0 | 309 | E194E (GAA→GAG) | tpn | IS431mec transposase |
| * | CP000730 | 1,929,843 | 0 | A | . | 65.3% | 79.7 / 116.1 | 72 | intergenic (‑926/‑242) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,861 | 0 | T | C | 64.8% | 79.8 / 54.7 | 72 | intergenic (‑944/‑224) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,875 | 0 | T | C | 64.4% | 70.3 / 69.5 | 73 | intergenic (‑958/‑210) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,870 | 0 | A | C | 63.5% | 70.0 / 71.0 | 74 | intergenic (‑953/‑215) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,872 | 0 | G | A | 63.5% | 54.2 / 74.8 | 74 | intergenic (‑955/‑213) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,873 | 0 | C | A | 63.5% | 50.3 / 76.4 | 74 | intergenic (‑956/‑212) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 36,315 | 0 | G | A | 63.2% | 212.5 / inf | 504 | Y79Y (TAC→TAT) | tpn | IS431mec transposase |
| * | CP000730 | 36,413 | 0 | C | T | 62.9% | 144.5 / 275.0 | 279 | V47I (GTC→ATC) | tpn | IS431mec transposase |
| * | CP000730 | 36,269 | 0 | C | T | 62.7% | 189.6 / inf | 474 | A95T (GCA→ACA) | tpn | IS431mec transposase |
| * | CP000730 | 76,295 | 0 | T | C | 61.8% | 190.3 / 316.4 | 330 | intergenic (+353/‑781) | USA300HOU_0072/USA300HOU_0075 | universal stress protein/lysophospholipase |
| * | CP000730 | 1,929,866 | 0 | G | T | 61.8% | 52.1 / 68.3 | 72 | intergenic (‑949/‑219) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 76,322 | 0 | G | A | 61.4% | 130.0 / 303.3 | 294 | intergenic (+380/‑754) | USA300HOU_0072/USA300HOU_0075 | universal stress protein/lysophospholipase |
| * | CP000730 | 36,087 | 0 | A | G | 61.4% | 335.1 / inf | 418 | C155C (TGT→TGC) | tpn | IS431mec transposase |
| * | CP000730 | 1,929,917 | 0 | C | T | 60.8% | 43.5 / 83.8 | 79 | intergenic (‑1000/‑168) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |
| * | CP000730 | 1,929,918 | 0 | A | G | 60.3% | 50.2 / 81.5 | 79 | intergenic (‑1001/‑167) | USA300HOU_1794/USA300HOU_1796 | hypothetical protein/hypothetical protein |