New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 512620 =57 (1.090)31 (0.860)
+TTATCTTGTCCATTTTATTTTTTAACCAAAATTTGATTAA
26/180 NT 44.1% intergenic (+688/‑173) recR/rrs1 recombination protein RecR/16S ribosomal RNA
?CP000730 1998278 = NA (NA)intergenic (‑6/+5) USA300HOU_t0050/rrf4 tRNA‑Val/5S ribosomal RNA

ACTGATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTATAC  >  CP000730/1998138‑1998418
                                                                                                                                             |                                                                                                                                            
aCTGATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGCCGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGGTTTa                                                                                                                                              >  2:3706/1‑141 (MQ=25)
      tACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTg                                                                                                                                        <  1:149450/141‑1 (MQ=40)
        cAAGTCAGTTGCTCTACCAATGGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTACGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGcc                                                                                                                                      <  2:39747/141‑1 (MQ=255)
         aaGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCt                                                                                                                                     <  1:42017/141‑1 (MQ=255)
           gTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTgg                                                                                                                                   <  1:245119/141‑1 (MQ=255)
             cAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGTTTTTAATGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCa                                                                                                                                 >  1:443499/1‑141 (MQ=255)
                 tGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGt                                                                                                                             >  1:605974/1‑141 (MQ=255)
                 tGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGATCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGt                                                                                                                             >  2:473882/1‑141 (MQ=255)
                 tGCTCTACCAATTGAGATAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGt                                                                                                                             >  1:363174/1‑141 (MQ=255)
                  gCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGtt                                                                                                                            <  1:527346/141‑1 (MQ=255)
                      aagcAATTGCGCTAGGCCAGCAATATGTATGCATAAATGGCGTATAAGGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGTTGCTCTCCCAGCTGATCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTAc                                                                                                                        <  2:323506/138‑1 (MQ=17)
                       aCCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTAct                                                                                                                       >  1:242668/1‑141 (MQ=255)
                       aCCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTAct                                                                                                                       >  2:53882/1‑141 (MQ=255)
                         cAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTActct                                                                                                                     >  1:32676/1‑141 (MQ=255)
                         cAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTActct                                                                                                                     <  2:334965/141‑1 (MQ=255)
                            ttGGGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGACCCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGc                                                                                                                  <  1:65500/141‑1 (MQ=255)
                               aGCTAGGCCGGCAATATGTAAGAATAAATGGTGGCGAATGACTGGTTCTAACCGCCGACCCACTACTAGTAAAGTAGATGCTCGCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTGCTCTAGCGGa                                                                                                               >  1:456183/1‑141 (MQ=17)
                               aGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGa                                                                                                               >  2:309371/1‑141 (MQ=255)
                                 cTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAAc                                                                                                             <  2:157194/141‑1 (MQ=255)
                                  tAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACg                                                                                                            <  1:555961/141‑1 (MQ=255)
                                   aGGCCGGAAATATGTAAGAATAAATGGTGGAGAATGAGGGGTGCGAACCGCCGACCCGTTGCTTGTAAGGCAGATGCAATCCCAGCTGAGCTAATTGTCCGATATAAAACTGACTGGCAACATTTTGCTCTAGCGGAACGt                                                                                                           >  2:187962/1‑141 (MQ=17)
                                      ccGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAg                                                                                                        <  2:153513/141‑1 (MQ=255)
                                       cGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAGAACTGCCTGGCAACGTTATACTCTAGCGGAACGTAAGt                                                                                                       >  2:583396/1‑141 (MQ=255)
                                       cGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCCCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGt                                                                                                       <  1:475108/141‑1 (MQ=255)
                                          cAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCg                                                                                                    >  1:203668/1‑141 (MQ=255)
                                            atatGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGAc                                                                                                  >  1:227002/1‑141 (MQ=255)
                                            atagGTAAGAATAAAGGGTGGGGATTGACGGGTTCGAACCGCCGACCCGCTGGTTGTAAGGCAGATGCTCTCCCATCTGATCTAATTCTCCGATTTAAAACTGGCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGAc                                                                                                  <  2:52886/141‑1 (MQ=17)
                                                gcaaGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTAcc                                                                                              <  2:238167/139‑1 (MQ=255)
                                                  aaggacaaaTGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAAGTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCAt                                                                                            <  1:135625/135‑1 (MQ=255)
                                                   agtaTAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATc                                                                                           <  2:149241/138‑1 (MQ=255)
                                                    gAATACATGGTGGCGTACGACGGGTTCGAACCGCTGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCGGATTTCAAACTGCTTGGCAACGTTCTACTCTAGCGGATCGTAAGTTCGACTACCATCg                                                                                          <  1:371716/141‑1 (MQ=14)
                                                     aaTAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGa                                                                                         <  2:488978/141‑1 (MQ=255)
                                                      aTAAATGGGGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGAc                                                                                        <  1:244490/141‑1 (MQ=255)
                                                              tggAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAggg                                                                                >  1:194839/1‑140 (MQ=255)
                                                                tgataTGACGTGTTCTGACCGCCTGTCCTCCGCTTTTAAGGCGTATGCTCTCCCAGCTTAGCTAATTCTCCGATTTAAAACTTCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGc                                                                              <  2:323643/137‑1 (MQ=14)
                                                                gagaaatacggaaacGAACCGCCGACCCTCTTCTTATAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTGAAAACTGCCTGGCAACGTTCTACTCTACCGGAACGTAAGTTCGACCACCACCGACGCTAAGGAGc                                                                              >  2:55289/15‑141 (MQ=14)
                                                                gagaATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGCGAATTGCTTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGc                                                                              <  1:141425/141‑1 (MQ=14)
                                                                  aaaggACGGGTCCGAACCGCCGACCCCCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCtt                                                                            <  2:151026/137‑1 (MQ=255)
                                                                        cGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTc                                                                      <  1:79651/141‑1 (MQ=255)
                                                                        cGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTc                                                                      <  1:529615/141‑1 (MQ=255)
                                                                        cGGCTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATCCCCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACCCCCGCGGAACGGAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTc                                                                      <  2:305890/141‑1 (MQ=14)
                                                                            ttCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCtgtg                                                                  <  1:559125/141‑1 (MQ=255)
                                                                                aaCCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCg                                                              <  1:168617/141‑1 (MQ=255)
                                                                                 aCCGCCGCCCCTCCGCTGGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCgg                                                             <  1:37697/141‑1 (MQ=255)
                                                                                  ccgccgACCCTCTGCTTGTAAGGCAGATGCTCTCCCGGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTCGCATCGACGCTAAGGAGCTAAACTTCTGTGTTCGGc                                                            >  2:142892/1‑141 (MQ=255)
                                                                                   cgccgACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCa                                                           >  1:452066/1‑141 (MQ=255)
                                                                                    gccgACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTTGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCAt                                                          <  1:63085/141‑1 (MQ=255)
                                                                                        agccTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGa                                                      <  2:69170/139‑1 (MQ=255)
                                                                                         cccTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGaa                                                     >  2:50772/1‑141 (MQ=255)
                                                                                           ctctGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACa                                                   >  2:228560/1‑141 (MQ=255)
                                                                                                 ttGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGtgtg                                             <  2:203668/141‑1 (MQ=255)
                                                                                                    tAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcc                                          <  2:86564/141‑1 (MQ=255)
                                                                                                     aaGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTCCGGCATGGGAACAGGTGTGAcct                                         >  1:69441/1‑141 (MQ=255)
                                                                                                     aaGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCCTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcct                                         <  2:363174/141‑1 (MQ=255)
                                                                                                          agagGCCCTCCCAGCTGAGCTACTTCGTCGATTTAAAACTGCCTGGCAACGTTCTACTCTGGCGGAACGTAAGTTCGACTACCATCGACGCGAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGAcctcctgg                                    <  2:315363/141‑3 (MQ=14)
                                                                                                           gctgcccccccAGCTGAGCTAATTCCCCGATTTAAAATCGCCTCGCGACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGTAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGc                                   <  1:167403/133‑1 (MQ=14)
                                                                                                           gATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCCTCGACGCTAAGGAGCCTAACTTCTGTGTTCGGCATGGGAACAGCTGTGGCCCCCTTGc                                   >  2:534501/1‑141 (MQ=17)
                                                                                                             tgcccccccAGCTGGGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGCGCTAAGATTATGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCta                                 <  2:100244/135‑1 (MQ=14)
                                                                                                              gCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCtat                                >  1:511886/1‑141 (MQ=255)
                                                                                                                tctcCCCGCTGGGCCTATTCTCCGATTTAAAACGGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACCACCAGCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAg                              <  2:51424/141‑1 (MQ=14)
                                                                                                                 ctcCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATCGt                             >  2:511135/1‑141 (MQ=255)
                                                                                                                 ctcCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGt                             >  1:526892/1‑141 (MQ=255)
                                                                                                                 ctcCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGt                             <  1:429998/141‑1 (MQ=255)
                                                                                                                    ccATCTGAGCTAATTCTCCGATCTAAAACTGCCAGGCACCGGTCACCATTAGCGCAACGTATGTTCGTCTACCATCGACGCTAATGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGTCCTCCTTGCTATAGTCAc                          <  2:521025/141‑1 (MQ=14)
                                                                                                                    ccAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCAc                          >  1:534311/1‑141 (MQ=255)
                                                                                                                     cAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCAcc                         >  1:40802/1‑141 (MQ=255)
                                                                                                                     cAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCAcc                         >  1:247134/1‑141 (MQ=255)
                                                                                                                           aGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACat                   >  1:253449/1‑141 (MQ=255)
                                                                                                                              tAATTCTCCGATTTAAAACTGCCTGGCAACTTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTATCTTCTGTGTTCGGCATGGGAACAGGTGTTACCTCCGTGCTAGAGTCACCAGACATATg                <  2:175622/141‑1 (MQ=14)
                                                                                                                                      ccGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTaa         >  2:605593/1‑141 (MQ=39)
                                                                                                                                       cGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAAt        <  2:605974/141‑1 (MQ=38)
                                                                                                                                          tttAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTta     <  1:309371/141‑1 (MQ=35)
                                                                                                                                            tAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTtata   <  1:53882/141‑1 (MQ=34)
                                                                                                                                            tAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTtata   >  1:81570/1‑141 (MQ=34)
                                                                                                                                             aaaaCTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTATAc  <  2:312502/141‑1 (MQ=33)
                                                                                                                                             |                                                                                                                                            
ACTGATTACAAGTCAGTTGCTCTACCAATTGAGCTAGGCCGGCAATATGTAAGAATAAATGGTGGAGAATGACGGGTTCGAACCGCCGACCCTCTGCTTGTAAGGCAGATGCTCTCCCAGCTGAGCTAATTCTCCGATTTAAAACTGCCTGGCAACGTTCTACTCTAGCGGAACGTAAGTTCGACTACCATCGACGCTAAGGAGCTTAACTTCTGTGTTCGGCATGGGAACAGGTGTGACCTCCTTGCTATAGTCACCAGACATATGAATGTAATTTATAC  >  CP000730/1998138‑1998418

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.