New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 2561201 =55 (1.050)3 (0.060) 3/232 NT 5.9% intergenic (+30/+33) USA300HOU_2422/USA300HOU_2423 hypothetical protein/hypothetical protein
?CP000730 2561237 = 47 (1.000)coding (804/807 nt) USA300HOU_2423 hypothetical protein

AGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCCCATAA  >  CP000730/2561099‑2561376
                                                                                                                                          |                                                                                                                                           
aGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTaaaa                                                                                                                                           >  2:501809/1‑140 (MQ=255)
aGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAAAAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAAt                                                                                                                                           >  1:534276/1‑141 (MQ=255)
   aagaaAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTc                                                                                                                                        <  2:417058/141‑1 (MQ=255)
    agaaAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCt                                                                                                                                       <  1:562301/141‑1 (MQ=255)
          tGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTattatt                                                                                                                                 >  1:85177/1‑141 (MQ=255)
           gCATTTATGTGCAATCACATTCCTATACAATTGAAAATCAGCAACAAAATAAACACACGTGAGTAAACACATGACTCGCGTGTGTAAATCATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTAttt                                                                                                                                <  1:108618/141‑1 (MQ=255)
               ttATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTAt                                                                                                                            <  1:347325/141‑1 (MQ=255)
                  tgtgCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGt                                                                                                                         >  2:325513/1‑141 (MQ=255)
                   gtgCCACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAACATCCGCAAACTGGGTCAGGTATGCGCATTTTAAACTTCTATTATTTGTATCGtt                                                                                                                        >  1:416094/1‑140 (MQ=255)
                     gCAACCATATTCATATACGAGTGAGAAGCAGCAACAAAAGAAACACAGGTACGTAAACACATTCCTCGCGTGTGGAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGtctc                                                                                                                      <  2:173249/141‑1 (MQ=255)
                        aCCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTGAACGCTTTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCatt                                                                                                                   <  1:473330/141‑1 (MQ=255)
                        aCCACATTCATATACAATTCAAAATCAGCAACAAAATAAACACCCGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCatt                                                                                                                   <  1:544441/141‑1 (MQ=255)
                         ccACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCattt                                                                                                                  >  2:402518/1‑141 (MQ=255)
                         ccACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGCCAGGTTTGCGCATTTTAAATTTCTAATATTTGTATCGTCTCattt                                                                                                                  >  2:255961/1‑141 (MQ=255)
                             aTTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTAAGGTTTGCGCGTTTTAAATTTCTATTATTTGTATCGTCTCatttattt                                                                                                              >  1:113200/1‑141 (MQ=255)
                               tCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTcc                                                                                                            >  1:289534/1‑141 (MQ=255)
                                gaaataCAATTAAAAATCAGCAACCAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGAATTGCGCAATATCAATAGATATTGTTTGGATCGTCTCATTTATTTCCt                                                                                                           >  2:428320/4‑141 (MQ=255)
                                cATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCACATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCt                                                                                                           <  2:295765/141‑1 (MQ=255)
                                 atatACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAAAACATTACTAGCGTGTGTAAAACATAACATGCGCAAACTGGGTCAGGTTGGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTg                                                                                                          <  1:478944/141‑1 (MQ=255)
                                          gtaaaaTCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGCAAAACAGAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtc                                                                                                 <  1:511517/139‑1 (MQ=255)
                                           gAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACCCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtct                                                                                                <  1:79959/141‑1 (MQ=255)
                                              ggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaatttaaaatgcgcaaactgggtcaggtttgcgcattttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtcttct                                                                                             >  2:412352‑M2/93‑141 (MQ=255)
                                              ggcgttcagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATGCGCAAACCTGACCCCGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtcttct                                                                                             <  1:412352‑M1/85‑1 (MQ=255)
                                              aaTCAGAAACAAAATAAACACACGTAAGTAAGCACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTTCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATAtcttct                                                                                             <  2:79216/141‑1 (MQ=255)
                                               gcgttcagaagatatttaacaggaaataaatgagacgatacaaataatagaaatttaaaatgcgcaaactgggtcaggtttgcgcattttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTg                                                                                            <  2:295123‑M2/50‑1 (MQ=255)
                                               aTCAGCAACAAAATAAACACACATAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTg                                                                                            <  2:147181/141‑1 (MQ=255)
                                               aTCAGAAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTg                                                                                            <  2:326596/141‑1 (MQ=255)
                                                tCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCGAACTGGGTCAGGTCGGCGCATGTAAAAGTGCGAGTATTTGGATCGTCTCATTTATTTCCTGGTAGATATGTTCTGa                                                                                           >  2:217350/1‑141 (MQ=255)
                                                tCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGa                                                                                           >  1:476230/1‑141 (MQ=255)
                                                    cagaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATGCGCAAACCTGACCCAGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGTTAAATATCTTCTGAACGc                                                                                       <  2:295123‑M1/91‑1 (MQ=255)
                                                     agaagatatttaccaggaaataaatgagacgatacaaataatagaaatttaaaatgcgcaaacggggtcaggtttgcgcattttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGcc                                                                                      <  1:412352‑M2/56‑1 (MQ=255)
                                                     agaagatatttaccaggaaataaatgagacgatacaaataatagaaattTAAAATGCGCAAACCTGACCCAGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGcc                                                                                      >  2:412352‑M1/50‑141 (MQ=255)
                                                     aacaaAATAAACACACGTAAGTAAACACATTACACGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGACCGcc                                                                                      <  1:415367/141‑1 (MQ=255)
                                                         aaaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTg                                                                                  >  2:73494/1‑141 (MQ=255)
                                                         aaaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTg                                                                                  >  2:350263/1‑141 (MQ=255)
                                                          aaTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGt                                                                                 >  2:372975/1‑141 (MQ=255)
                                                           aTAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTCAATATCTTCTGAACGCCCTTGTc                                                                                >  2:79448/1‑141 (MQ=255)
                                                               acacacGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTgg                                                                            >  2:38917/1‑141 (MQ=255)
                                                                cacacGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTCTTCTTTGTAGCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTTTCTTGGa                                                                           <  2:431206/141‑1 (MQ=255)
                                                                cacacGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGa                                                                           >  1:65134/1‑141 (MQ=255)
                                                                  cacGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATa                                                                         >  2:98901/1‑141 (MQ=255)
                                                                   acGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAg                                                                        >  1:555689/1‑141 (MQ=255)
                                                                      taaccaaaaccaTCACTCGAATGAGTACAACATAAAAAGCGCAAAATGGGTCAGGTTTGCGCAATTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCt                                                                     <  1:276942/131‑1 (MQ=255)
                                                                          taaACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGac                                                                 >  1:328222/1‑141 (MQ=255)
                                                                            atcacaTGACTCGCGTGTGTAAAACCTAAAATTCGCAAACTGGGTCAGGTTTGCGCTTTTTAAATTCCTATCATTTTTAGCGTCCCATTTATTTCCTGGTACATATCTTCTGAACGCCATTGTCTGGGATAGCCTATaccc                                                               <  2:2839/139‑3 (MQ=255)
                                                                                  ttACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACag                                                         >  1:499616/1‑141 (MQ=255)
                                                                                  ttACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACag                                                         >  2:320746/1‑141 (MQ=255)
                                                                                        gcgTGTGTAAAACATAAAATGCGCTAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATaa                                                   >  1:390810/1‑141 (MQ=255)
                                                                                           tgtgtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCCAGACACGGACAGAGATAACAt                                                <  1:325513/141‑1 (MQ=255)
                                                                                             tgtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCt                                              >  2:446594/1‑141 (MQ=255)
                                                                                             tgtAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCt                                              <  2:432016/141‑1 (MQ=255)
                                                                                                 aaaCATAAAATGCGCAAACTGGATCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCca                                          >  2:446360/1‑141 (MQ=255)
                                                                                                   aCATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCcatc                                        <  1:275409/141‑1 (MQ=255)
                                                                                                     tttattTGCGCATACTGGGTCAGGTTTTCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCTTAGACACGGACAGAGATAACATCTGCcatcat                                      >  2:100895‑M1/7‑141 (MQ=255)
                                                                                                          ATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATc                                 >  1:157311‑M1/1‑141 (MQ=255)
                                                                                                              GCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATGacac                             <  2:116766‑M1/141‑1 (MQ=255)
                                                                                                              GCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCacac                             <  1:213918‑M1/141‑1 (MQ=255)
                                                                                                               CAAACTGGGTCAGGTTTGCGCAGTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCATGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATctatcaaaca                            >  2:345894‑M1/1‑137 (MQ=255)
                                                                                                                AAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTCTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCTTCTATCATACtt                           >  1:431603‑M1/1‑141 (MQ=255)
                                                                                                                 AACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCAATTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACttt                          <  2:239649‑M1/141‑1 (MQ=255)
                                                                                                                   CTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTTTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTa                        >  2:255573‑M1/1‑141 (MQ=255)
                                                                                                                   CTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTa                        >  2:393863‑M1/1‑141 (MQ=255)
                                                                                                                     gggTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACg                      <  2:231692/141‑1 (MQ=255)
                                                                                                                      ggTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCCATCACACTTTTACGa                     >  1:510069/1‑141 (MQ=255)
                                                                                                                         cAGGTTTGCGCATTTAAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGGAAATATCGGCTGAACGCCATCGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGaaaa                  <  1:24600/141‑1 (MQ=255)
                                                                                                                                     ttttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACCTGGccc      >  1:464136‑M2/6‑141 (MQ=255)
                                                                                                                                      tttaAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCCCa     <  2:213918‑M2/137‑1 (MQ=255)
                                                                                                                                        tcaaTTTCTATTATTTGTAGCGTCTCATTTTTTTCCTTCTAAATATCTTCTGCACGCCATTGTTTTGGATAGCCTAGACGCGTACAGAGATAACATCTGCCATCATCTATCACACTTATACGAAAAAGAACATGGCCCata   <  2:416094/139‑1 (MQ=255)
                                                                                                                                        taAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCCCATa   <  2:292805‑M2/139‑1 (MQ=255)
                                                                                                                                         aAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCCCATaa  <  1:402518‑M2/140‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                           
AGGAAGAAAGTGCATTTATGTGCAACCACATTCATATACAATTGAAAATCAGCAACAAAATAAACACACGTAAGTAAACACATTACTCGCGTGTGTAAAACATAAAATGCGCAAACTGGGTCAGGTTTGCGCATTTTAAATTTCTATTATTTGTATCGTCTCATTTATTTCCTGGTAAATATCTTCTGAACGCCATTGTCTTGGATAGCCTAGACACGGACAGAGATAACATCTGCCATCATCTATCACACTTTTACGAAAATGAACATGGCCCATAA  >  CP000730/2561099‑2561376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.