| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2687481 | 83 (1.200) | 5 (0.080) | 5/278 | 1.9 | 6.0% | intergenic (+35/+34) | clp/USA300HOU_2543 | S14 family endopeptidase Clp/hypothetical protein |
| ? | CP000730 | = 2687499 | 81 (1.270) | intergenic (+53/+16) | clp/USA300HOU_2543 | S14 family endopeptidase Clp/hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCATTAAGACGTATTGTTGAACAGCAAGTACGTGACAAAATTACAGATTACTATTTAGATCATACAGACGTTAAACATGTGGATATAGATGTTGAGGATAACGAATTAGTCGTAAAAGGTAAATAACGACACTTTAACATATCGCGCATCAAAAATGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2687321‑2687481‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaatgagcaCAGGCAAGGGCGACCTGATGCTCATTTTTGATGCGCGATATGTTAAAGTGTCGTTATTTACCTTTTACGACTAATTCGTTATCCTCAACATCTATATCCACATGTTTAACGTCTGTATGATCTAAATAGTAATCTGTAATTTTGTCACG < CP000730/2687499‑2687351 CCATTAAGACGTATTGTTGAACAGCAAGTACGTGACAAAATTACAGATTACTATTTAGATCATACAGACGTTAAACATGTGGATATAGATGTTGAGGATAACGAATTAGTCGTAAAAGGTAAATAACGACACTTTAACATATCGCGCATCA > 1:462781/1‑151CCATCAAGACGTATTGTTGAACAGCAAGTACGTGACAAAATTACAGATTACTATTTAGATCATAACGACGTTAAACATGTGGATATAGATGTTGAGGATAACGAATTAGTCGTAAAAGGTAAATAACGACACTTTAACATATCGCGCATCA > 2:747323/1‑151 TAAGACGTATTGTTGAACAGCAAGTACGTGACAAAATTACAGATTACTATTTAGATCATACAGACGTTAAACATGTGGATATAGATGTTGAGGATAACGAATTAGTCGTAAAAGGTAAATAACGACACTTTAACATATCGCGCATCAAAAA > 1:388233/1‑151 AGACGTATTGTTGAACAGCAAGTACGTGACAAAATTACAGATTACTATTTAGATCATACAGACGTTAAACATGTGGATATAGATGTTGAGGATAACGAATTAGTCGTAAAAGGTAAATAACGACACTTTAACATATCGCGCATCAAAAATG < 2:297044/151‑1 AGACGTATTGTTGAACAGCAAGTACGTGACAAAATTACAGATTACTATTTAGATCATACAGACGTTAAACATGTGGATATAGATGTTGAGGATAACGAATTAGTCGTAAAAGGTAAATAACGACACTTTAACATATCGCGCATCAAAAATG > 1:997147/1‑151 CGTATTGTTGAACAGCAAGTACGTGACAAAATTACAGATTACTATTTAGATCATACAGACGTTAAACATGTGGATATAGATGTTGAGGATAACGAATTAGTCGTAAAAGGTAAATAACGACACTTTAACATATCGCGCATCAAAAATGAGC > 1:36878/1‑151 CGTATTGTTGAACAGCAAGTACGTGACAAAATTACAGATTACTATTTAGATCATACAGACGTTAAACATGTGGATATAGATGTTGAGGATAACGAATTAGTCGTAAAAGGTAAATAACGACACTTTAACATATCGCGCATCAAAAATGAGC > 1:274372/1‑151 AAAATTACAGATTACTATTTAGATCATACAGACGTTAAACATGTGGATATAGATGTTGAGGATAACGAATTAGTCGTAAAAGGTAAATAACGACACTTTAACATATCGCGAAAAAAAAATGAGCACAGGCAAGGGCGACCTGATGCTCATT < 2:479348/151‑1 AATTACAGATTACTATCTAGATCATACAGACGTTAAACATGTGGATATAGATGTTGAGGATAACGAATTAGTCGTAAAAGGTAAATAACGACACTTTAACATATCGCGCATCAAAAATGAGCACAGGCAAGGGCGACCTGATGCTCATTTT < 1:331403/151‑1 ATTACAGATTACTATTTAGATCATACAGACGTTAAACATGTGGATATAGATGTTGAGGATAACGAATTAGTCGTAAAAGGTAAATAACGACACTTTAACATATCGCGCATCAAAAATGAGCACAGGCAAGGGCGACCTGATGCTCATTTTT < 2:811770/151‑1 TACAGATTACTATTTAGATCATACAGACGTTAAACATGTGGATATAGATGTTGAGGATAACGAATTAGTCGTAAAAGGTAAATAACGACACTTTAACATATCGCGCATCAAAAATGAGCACAGGCAAGGGCGACCTGATGCTCATTTTTGA < 2:191715/151‑1 CAGATTACTATTTAGATCATACAGACGTTAAACATGTGGATATAGATGTTGAGGATAACGAATTAGTCGTAAAAGGTAAATAACGACACTTTAACATATCGCGCATCAAAAATGAGCACAGGCAAGGGCGACCTGATGCTCATTTTTGATG < 2:538228/151‑1 AATGAGCACAGGCAAGGGCGACCTGATGCTCATTTTTGATGCGCGATATGTTAAAGTGTCGTTATTTACCTTTTACGACTAATTCGTTATCCTCAACATCTATATCCACATGTTTAACGTCTGTATGATCTAAATAGTAATCTGTAATTTT > 2:116468/1‑151 CACAGGCAAGGGCGACCTGATGCTCATTTTTGATGCGCGATATGTTAAAGTGTCGTTATTTACCTTTTACGACTAATTCGTTATCCTCAACATCTATATCCACATGTTTAACGTCTGTATGATCTAAATAGTAATCTGTAATTTTGTCACG < 2:167923/151‑1 CACAGGCAAGGGCGACCTGATGCTCATTTTTGATGCGCGATATGTTAAAGTGTCGTTATTTACCTTTTACGACTAATTCGTTATCCTCAACATCTATATCCACATGTTTAACGTCTGTATGATCTAAATAGTAATCTGTAATTTTGTCACG < 2:857387/151‑1 CCATTAAGACGTATTGTTGAACAGCAAGTACGTGACAAAATTACAGATTACTATTTAGATCATACAGACGTTAAACATGTGGATATAGATGTTGAGGATAACGAATTAGTCGTAAAAGGTAAATAACGACACTTTAACATATCGCGCATCAAAAATGAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2687321‑2687481‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaatgagcaCAGGCAAGGGCGACCTGATGCTCATTTTTGATGCGCGATATGTTAAAGTGTCGTTATTTACCTTTTACGACTAATTCGTTATCCTCAACATCTATATCCACATGTTTAACGTCTGTATGATCTAAATAGTAATCTGTAATTTTGTCACG < CP000730/2687499‑2687351 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |