| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 82395 = | 137 (1.980) | 8 (0.120) | 4/292 | 2.1 | 5.7% | coding (500/957 nt) | nikA | nickel (Ni2+)/peptide ABC superfamily ATP binding cassette transporter, membrane protein |
| ? | CP000730 | 82432 = | 132 (1.960) | coding (537/957 nt) | nikA | nickel (Ni2+)/peptide ABC superfamily ATP binding cassette transporter, membrane protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCGCTTTTAACGAAAAATGTCTTAACTGCGCCAGTTGATACGCATCTTGATCTAACGTTTGTGTAATCAGATGTGCTGTCATCAATAAGATATGACACCCTTCTATAACAACAATTGTGAAGATTGGCAGCACAAAGTGTTGCCATGAATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/82548‑82395‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcacAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCAGTTAAGACATTTTTCGTTAAAAGCGCGTATCATCGTACAAATTAAAGAGATATTTGCACC > CP000730/82432‑82581 CGCGCTTTTAACGAAAAATGTCTTAACTGCGCCAGTTGATACGCATCTTGATCTAACGTTTGTGTAATCAGATGTGCTGTCATCAATAAGATATGACACCCTTCTATAACAACAATTGTGAAGATTGGCAGCACAAAGTGTTGCCATGAAT > 2:920000/1‑151CGCGCTTTTAACGAAAAATGTCTTAACTGCGCCAGTTGATACGCATCTTGATCTAACGTTTGTGTAATCAGATGTGCTGTCATCAATAAGATATGACACCCTTCTATAACAACAATTGTGAAGATTGGCAGCACAAAGTGTTGCCATGAAT > 2:23761/1‑151CGCGCTTTTAACGAAAAATGTCTTAACTGCGCCAGTTGATACGCATCTTGATCTAACGTTTGTGTAATCAGATGTGCTGTCATCAATAAGATATGACACCCTTCTATAACAACAATTGTGAAGATTGGCAGCACAAAGTGTTGCCATGAAT < 1:275800/151‑1 CGCTTTTAACGAAAAATGTCTTAACTGCGCCAGTTGATACGCATCTTGATCTAACGTTTGTGTAATCAGATGTGCTGTCATCAATAAGATATGACACCCTTCTATAACAACAATTGTGAAGATTGGCAGCACAAAGTGTTGCCATGAATCA > 2:16970/1‑151 GCTTTTAACGAAAAATGTCTTAACTGCGCCAGTTGATACGCATCTTGATCTAACGTTTGTGTAATCAGATGTGCTGTCATCAATAAGATATGACACCCTTCTATAACAACAATTGTGAAGATTGGCAGCACAAAGTGTTGCCATGAATCAC < 1:35037/151‑1 GCTTTTAACGAAAAATGTCTTAACTGCGCCAGTTGATACGCATCTTGATCTAACGTTTGTGTAATCAGATGTGCTGTCATCAATAAGATATGACACCCTTCTATAACAACAATTGTGAAGATTGGCAGCACAAAGTGTTGCCATGAATCAC < 1:35224/151‑1 GCTTTTAACGAAAAATGTCTTAACTGCGCCAGTTGATACGCATCTTGATCTAACGTTTGTGTAATCAGATGTGCTGTCATCAATAAGATATGACACCCTTCTATAACAACAATTGTGAAGATTGGCAGCACAAAGTGTTGCCATGAATCAC < 2:465417/151‑1 TATAACAACAATTGTGAAGATTGGCAGCACAAAGTGTTGCCATGAATCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCAGTTAAGACATT > 2:896068/1‑151 TATAACAACAATTGTGAAGATTGGCAGCACAAAGTGTTGCCATGAATCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCAGTTAAGACATT > 1:892126/1‑151 ACAACAATTGTGAAGATTGGCAGCACAAAGTGTTGCCATGAATCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCAGTTAAGACATTTTTC > 2:984756/1‑151 ACAACAATTGTGAAGATTGGCAGCACAAAGTGTTGCCATGAATCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCAGTTAAGACATTTTTC > 2:359881/1‑151 ACAACAATTGTGAAGATTGGCAGCACAAAGTGTTGCCATGAATCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCAGTTAAGACATTTTTC > 2:868084/1‑151 ATTGGCAGCACAAAGTGTTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCAGTTAAGACATTTTTCTTTtttttcgcgtat > 2:356657/1‑139 ATTGGCAGCACAAAGTGTTGCCAATATTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCAGTTAAGACATTTTTCGTTAAAAGCGCGTAT > 1:269076/1‑151 TTGGCAGCACAAAGTGTTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCAGTTAAGACATTTTTCGTTAAAAGCGCGTATC > 2:892194/1‑151 TCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCAGTTAAGACATTTTTCGTTAAAAGCGCGTATCATCGTACAAATTAAAGAGATATTTGC < 2:401695/151‑1 CACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCAGTTAAGACATTTTTCGTTAAAAGCGCGTATCATCGTACAAATTAAAGAGATATTTGCA > 2:94851/1‑151 CACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCAGTTAAGACATTTTTCGTTAAAAGCGCGTATCATCGTACAAATTAAAGAGATATTTGCA > 2:606078/1‑151 CACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCAGTTAAGACATTTTTCGTTAAAAGCGCGTATCATCGTACAAATTAAAGAGATATTTGCA > 2:94845/1‑151 CAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCAGTTAAGACATTTTTCGTTAAAAGCGCGTATCATCGTACAAATTAAAGAGATATTTGCACC < 1:494648/151‑1 CAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCAGTTAAGACATTTTTCGTTAAAAGCGCGTATCATCGTACAAATTAAAGAGATATTTGCACC < 1:243584/151‑1 CAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCAGTTAAGACATTTTTCGTTAAAAGCGCGTATCATCGTACAAATTAAAGAGATATTTGCACC > 2:746991/1‑151 CAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCAGTTAAGACATTTTTCGTTAAAAGCGCGTATCATCGTACAAATTAAAGAGATATTTGCACC < 2:831895/151‑1 CAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCAGTTAAGACATTTTTCGTTAAAAGCGCGTATCATCGTACAAATTAAAGAGATATTTGCACC < 1:108483/151‑1 CGCGCTTTTAACGAAAAATGTCTTAACTGCGCCAGTTGATACGCATCTTGATCTAACGTTTGTGTAATCAGATGTGCTGTCATCAATAAGATATGACACCCTTCTATAACAACAATTGTGAAGATTGGCAGCACAAAGTGTTGCCATGAATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/82548‑82395‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcacAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCAGTTAAGACATTTTTCGTTAAAAGCGCGTATCATCGTACAAATTAAAGAGATATTTGCACC > CP000730/82432‑82581 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |