| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 338068 = | 110 (1.590) | 4 (0.060) | 4/282 | 2.1 | 4.0% | coding (2206/4440 nt) | essC | virulence protein EssC |
| ? | CP000730 | 338130 = | 90 (1.390) | coding (2268/4440 nt) | essC | virulence protein EssC | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAATTCGGCAAACTCATCGGAAATAATGAATAAATGTGGCATTGGTTCTGTCGCAATACCTTCTTTAAATAACTTATGGTATTGATTAATATGGTTAACATCATGCTCTCCGAATAAACGTTGACGTTTTCTCAATTCGGCTTTGATTGATGTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/338223‑338068‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatgttaaCCATATTAATCAATACCATAAGTTATTTAAAGAAGGTATTGCGACAGAACCAATGCCACATTTATTCATTATTTCCGATGAGTTTGCCGAATTAAAATCAGAACAACCTGATTTTATGAAAGAACTTGTATCAACGGCACGTATTGGACG > CP000730/338130‑338279 TAATTCGGCAAACTCATCGGAAATAATGAATAAATGTGGCATTGGTTCTGTCGCAATACCTTCTTTAAATAACTTATGGTATTGATTAATATGGTTAACATCATGCTCTCCGAATAAACGTTGACGTTTTCTCAATTCGGCTTTGATTGAT > 2:749266/1‑151TAATTCGGCAAACTCATCGGAAATAATGAATAAATGTGGCATTGGCTCTGTCGCAATACCTTCTTTAAATAACTTATGGTATTGATTAATATGGTTAACATCATGCTCTCCGAATAAACGTTGACGTTTTCTCAATTCGGCTTTGATTGAT > 1:276622/1‑151 AATTCGGCAAACTCATCGGAAATAATGAATAAATGTGGCATTGGTTCTGTCGCAATACCTTCTTTAAATAACTTATGGTATTGATTAATATGGTTAACATCATGCTCTCCGAATAAACGTTGACGTTTTCTCAATTCGGCTTTGATTGATG < 2:262477/151‑1 AATTCGACAAACTCATCGGAAATAATGAATAAATGTGGCATTGGTTCTGTCGCAATACCTTCTTTAAATAACTTATGGTATTGATTAATATGGTTAACATCATGCTCTCCGAATAAACGTTGACGTTTTCTCAATTCGGCTTTGATTGATG < 2:994711/151‑1 TCGGCAAACTCATCGGAAATAATGAATAAATGTGGCATTGGTTCTGTCGCAATACCTTCTTTAAATAACTTATGGTATTGATTAATATGGTTAACATCATGCTCTCCGAATAAACGTTGACGTTTTCTCAATTCGGCTTTGATTGATGTTA > 1:184159/1‑151 ATTGATTAATATGGTTAACATCATGCTCTCCGAATAAACGTTGACGTTTTCTCAATTCGGCTTTGATTGATGTTAACCATATTAATCAATACCATAAGTTATTTAAAGAAGGTATTGCGACAGAACCAATGCCACATTTATTCATTATTTC > 2:749817/1‑151 GATTAATATGGTTAACATCATGCTCTCCGAATAAACGTTGACGTTTTCTCAATTCGGCTTTGATTGATGTTAACCATATTAATCAATACCATAAGTTATTTAAAGAAGGTATTGCGACAGAACCAATGCCACATTTATTCATTATTTCCGA > 2:677092/1‑151 GTTAACATCATGCTCTCCGAATAAACGTTGACGTTTTCTCAATTCGGCTTTGATTGATGTTAACCATATTAATCAATACCATAAGTTATTTAAAGAAGGTATTGCGACAGAACCAATGCCACATTTATTCATTATTTCCGATGAGTTTGCC > 1:1031080/1‑151 CATGCTCTCCGAATAAACGTTGACGTTTTCTCAATTCGGCTTTGATTGATGTTAACCATATTAATCAATACCATAAGTTATTTAAAGAAGGTATTGCGACAGAACCAATGCCACATTTATTCATTATTTCCGATGAGTTTGCCGAATTAAA > 1:65737/1‑151 TGTTAACCATATTAATCAATACCATAAGTTATTTAAAGAAGGTATTGCGACAGAACCAATGCCACATTTATTCATTATTTCCGATGAGTTTGCCGAATTAAAATCAGAACGACCTGATTTTATGAAAGAACTTGTATCAACGGCACGTATT < 2:96755/151‑1 GTTAACCATATTAATCAATACCATAAGTTATTTAAAGAAGGTATTGCGACAGAACCAATGCCACATTTATTCATTATTTCCGATGAGTTTGCCGAATTAAAATCAGAACAACCTGATTTTATGAAAGAACTTGTATCAACGGCACGTATTG < 2:1031080/151‑1 TTAACCATATTAATCAATACCATAAGTTATTTAAATAAGGTATTGCGACAGAACCAATGCCACATTTATTCATTATTTCCGATGAGTTTGCCGAATTAAAATCAGAACAACCTGATTTTATGAAAGAACTTGTATCAACGGCACGTATTGG > 2:864886/1‑151 TTAACCATATTAATCAATACCATAAGTTATTTAAAGAAGGTATTGCGACAGAACCAATGCCACATTTATTCATTATTTCCGATGAGTTTGCCGAATTAAAATCAGAACAACCTGATTTTATGAAAGAACTTGTATCAACGGCACGTATTGG > 2:397675/1‑151 TTAACCATATTAATCAATACCATAAGTTATTTAAAGAAGGTATTGCGACAGAACCAATGCCACATTTATTCATTATTTCCGATGAGTTTGCCGAATTAAAATCAGAACAACCTGATTTTATGAAAGAACTTGTATCAACGGCACGTATTGG < 2:142099/151‑1 AACCATATTAATCAATACCATAAGTTATTTAAAGAAGGTATTGCGACAGAACCAATGCCACATTTATTCATTATTTCCGATGAGTTTGCCGAATTAAAATCAGAACAACCTGATTTTATGAAAGAACTTGTATCAACGGCACGTATTGGAC < 1:327958/151‑1 AACCATATTAATCAATACCATAAGTTATTTAAAGAAGGTATTGCGACAGAACCAATGCCACATTTATTCATTATTTCCGATGAGTTTGCCGAATTAAAATCAGAACAACCTGATTTTATGAAAGAACTTGTATCAACGGCACGTATTGGAC < 1:122555/151‑1 ACCATATTAATCAATACCATAAGTTATTTAAAGAAGGTATTGCGACAGAACCAATGCCACATTTATTCATTATTTCCGATGAGTTTGCCGAATTAAAATCAGAACAACCTGATTTTATGAAAGAACTTGTATCAACGGCACGTATTGGACG > 2:28156/1‑151 ACCATATTAATCAATACCATAAGTTATTTAAAGAAGGTATTGCGACAGAACCAATGCCACATTTATTCATTATTTCCGATGAGTTTGCCGAATTAAAATCAGAACAACCTGATTTTATGAAAGAACTTGTATCAACGGCACGTATTGGACG > 1:480621/1‑151 ACCATATTAATCAATACCATAAGTTATTTAAAGAAGGTATTGCGACAGAACCAATGCCACATTTATTCATTATTTCCGATGAGTTTGCCGAATTAAAATCAGAACAACCTGATTTTATGAAAGAACTTGTATCAACGGCACGTATTGGACG > 1:444954/1‑151 TAATTCGGCAAACTCATCGGAAATAATGAATAAATGTGGCATTGGTTCTGTCGCAATACCTTCTTTAAATAACTTATGGTATTGATTAATATGGTTAACATCATGCTCTCCGAATAAACGTTGACGTTTTCTCAATTCGGCTTTGATTGATGTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/338223‑338068‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatgttaaCCATATTAATCAATACCATAAGTTATTTAAAGAAGGTATTGCGACAGAACCAATGCCACATTTATTCATTATTTCCGATGAGTTTGCCGAATTAAAATCAGAACAACCTGATTTTATGAAAGAACTTGTATCAACGGCACGTATTGGACG > CP000730/338130‑338279 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |