New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP000730 | 1473650 = | 45 (1.520) | 4 (0.140) | 4/286 | 1.2 | 9.0% | coding (28374/31266 nt) | ebh | extracellular matrix binding protein |
? | CP000730 | 1473682 = | 38 (1.340) | coding (28342/31266 nt) | ebh | extracellular matrix binding protein | |||||
Rejected: Frequency below/above cutoff threshold. |
GTTAAATGGATTAAATCAACAGCAACAAGATCTTGCACATAAAGCAATTAACAATGCCGATACTGTATCAGATGTAACAGATATTGTTAATAATCAAATTGACTTAAATGATGCAATGGAAACATTGAAACATTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1473785‑1473650 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catttaAGTCAATTTGATTATTAACAATATCTGTTACATCTGATACAGTATCGGCATTGTTAATTGCTTTATGTGCAAGATCTTGTTGCTGTTGATTTAATCCATTTAACGAATTAACAAACGCATTTGCTTTATCTTTGGCATTTGCAA > CP000730/1473682‑1473825 GTTAAATGGATTAAATCAACAGCAACAAGATCTTGCACATAAAGCAATTAACAATGCCGATACTGTATCAGATGTAACAGATATTGTTAATAATCAAATTGACTTAAATGTTTCAATGTTTCCATTGCATCATTTAAGTCAATTTGATTAT < 2:63346/151‑1 AATGGATTAAATCAACAGCAACAAGATCTTGCACATAAAGCAATTAACAATGCCGATACTGTATCAGATGTAACAGATATTGTTAATAATCAAATTGACTTAAATGTTTCAATGTTTCCATTGCATCATTTAAGTCAATTTGATTATTAAC < 1:86724/151‑1 TAAATGATGCAATGGAAACATTGAAACATTTAAGTCAATTTGATTATTAACAATATCTGTTACATCTGATACAGTATCGGCATTGTTAATTGCTTTATGTGCAAGATCTTGTTGCTGTTGATTTAATCCATTTAACGAATTAACAAACGCA > 2:108904/1‑151 ACATTTAAGTCAATTTGATTATTAACAATATCTGTTACATCTGATACAGTATCGGCATTGTTAATTGCTTTATGTGCAAGATCTTGTTGCTGTTGATTTAATCCATTTAACGAATTAACAAACGCATTTGCTTTATCTTTGGCATTTGCAA < 1:63346/151‑1 GTTAAATGGATTAAATCAACAGCAACAAGATCTTGCACATAAAGCAATTAACAATGCCGATACTGTATCAGATGTAACAGATATTGTTAATAATCAAATTGACTTAAATGATGCAATGGAAACATTGAAACATTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/1473785‑1473650 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catttaAGTCAATTTGATTATTAACAATATCTGTTACATCTGATACAGTATCGGCATTGTTAATTGCTTTATGTGCAAGATCTTGTTGCTGTTGATTTAATCCATTTAACGAATTAACAAACGCATTTGCTTTATCTTTGGCATTTGCAA > CP000730/1473682‑1473825 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |