| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2508448 | 43 (1.450) | 4 (0.150) | 4/276 | 1.2 | 8.7% | intergenic (+680/+71) | sarZ/narK | transcriptional regulator/MFS family major facilitator transporter, nitrate:nitrite antiporter |
| ? | CP000730 | = 2508474 | 44 (1.610) | intergenic (+706/+45) | sarZ/narK | transcriptional regulator/MFS family major facilitator transporter, nitrate:nitrite antiporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGTTGATAAGCAACATATTACTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2508298‑2508448‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagccttaatATCATGC‑GC‑AATATTCGTAGCATGACATTAAGGCTTTAGTAGTGTATTCATTTTAAATTTAACTATGAAATTGGAATAGATGTTGATGAAGTAGTTTCATTGCTTGGTTTGATTTTAGGCAAGGTAATGGTTAA < CP000730/2508474‑2508341 TGTTGATAAGCAACATATTACTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAAT > 2:53581/1‑151 GCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATATCATGC‑GC‑AATATTCGTAGCA > 2:37050/1‑151 TGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATATCATGC‑GC‑AATATTCGTAGCATGACATTA < 1:37050/151‑1 GTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATATCATGC‑GC‑AATATTCGTAGCATGACATTAAGGCTTTAG < 1:305302/151‑1 ACTACTAAAGCCTTAATGTCATGCTACGAATATT‑G‑CGCATGATATTAAGGCTTTAGTAGTGTATTCATTTTAAATTTAACTATGAAATTGGAATAGATGTTGATGAAGTAGTTTCATTGCTTGGTTTGATTTTAGGCAAGGTAATGGTTAA > 1:231222/1‑151 TGTTGATAAGCAACATATTACTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2508298‑2508448‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagccttaatATCATGC‑GC‑AATATTCGTAGCATGACATTAAGGCTTTAGTAGTGTATTCATTTTAAATTTAACTATGAAATTGGAATAGATGTTGATGAAGTAGTTTCATTGCTTGGTTTGATTTTAGGCAAGGTAATGGTTAA < CP000730/2508474‑2508341 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |