New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2508448	43 (1.450)	4 (0.150)	4/276	1.2	8.7%	intergenic (+680/+71)	sarZ/narK	transcriptional regulator/MFS family major facilitator transporter, nitrate:nitrite antiporter
	?	CP000730	= 2508474	44 (1.610)					intergenic (+706/+45)	sarZ/narK	transcriptional regulator/MFS family major facilitator transporter, nitrate:nitrite antiporter
Rejected: Frequency below/above cutoff threshold.

TGTTGATAAGCAACATATTACTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATACCGCT  >  CP000730/2508298‑2508597                                                                                                                                                       |                                                                                                                                                        tGTTGATAAGCAACATATTACTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAAT                                                                                                                                                         >  2:53581‑M1/1‑151 (MQ=255)    tGATAAGCAACATATTACTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTc                                                                                                                                                      >  2:72551/1‑151 (MQ=255)      aTAAGCAACATATTACTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCAt                                                                                                                                                    <  1:301645/151‑1 (MQ=255)                   tACTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑g                                                                                                                                      >  2:443714/1‑151 (MQ=255)                     cTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑gc‑g                                                                                                                                   >  2:441458/1‑151 (MQ=255)                      tGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑gc‑gc                                                                                                                                  >  1:361517/1‑151 (MQ=255)                       gCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATatcatgcgcaatattcgtagca                                                                                                                                   >  2:37050‑M1/1‑129 (MQ=255)                        cTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCAt                                                                                                                                >  1:23908/1‑151 (MQ=255)                               tGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATatcatgcgcaatattcgtagcatgacatta                                                                                                                           <  1:37050‑M1/151‑31 (MQ=255)                                       ggTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTg                                                                                                                 >  2:172992/1‑151 (MQ=255)                                       ggTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTg                                                                                                                 <  2:219593/151‑1 (MQ=255)                                        gTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATatcatgcgcaatattcgtagcatgacattaaggctttag                                                                                                                  <  1:305302‑M1/151‑40 (MQ=255)                                        gTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGt                                                                                                                >  2:307075/1‑151 (MQ=255)                                           attaACTATTACCTTGCCTAAAATCAAACCAAGCATTGAAACTACTTTATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGCAATGCTACGTATAGT‑GA‑TCATTATATTAAGGCTTCGTAtt                                                                                                             >  2:330763/1‑151 (MQ=255)                                            ttaACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATATCATGCG‑C‑AATATTCGTAGCATGACattaaggctttagtagt                                                                                                            >  1:231222‑M2/1‑134 (MQ=255)                                               aCCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAAc                                                                                                         <  2:344841/151‑1 (MQ=255)                                               aCCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAAc                                                                                                         <  2:344840/151‑1 (MQ=255)                                                           ccTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGc                                                                                             >  2:152842/1‑151 (MQ=255)                                                                    aaaCCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTAc                                                                                    >  1:218924/1‑151 (MQ=255)                                                                     aaccaaccAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGGTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACa                                                                                   <  1:319536/151‑1 (MQ=255)                                                                            cAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAAc                                                                            >  2:228155/1‑151 (MQ=255)                                                                              aTGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCg                                                                          >  1:327834/1‑151 (MQ=255)                                                                                 aaaCTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGttt                                                                       >  1:277917/1‑151 (MQ=255)                                                                                      actTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCaa                                                                  >  2:207596/1‑151 (MQ=255)                                                                                                cATCTATTCAAATTTCATAGTTAAATTTAAAATGCATACACTACTAAAGCATTACTGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCCACCGTTTTTCAATGAGCAattt                                                        >  2:384981/1‑149 (MQ=255)                                                                                                     aTTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAATCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATCTTAAGGCTTTGTCTTAATCTAAATGCATTGGATGTATTCAGTAAAAACCGTTTTTCAATGAGCCATATTCttt                                                   >  1:294407/1‑151 (MQ=255)                                                                                                       tCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCttttt                                                 >  1:448159/1‑151 (MQ=255)                                                                                                         cAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTgg                                               <  1:148067/151‑1 (MQ=255)                                                                                                         cAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTgg                                               >  2:98325/1‑151 (MQ=255)                                                                                                         cAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTgg                                               <  2:69854/151‑1 (MQ=255)                                                                                                            tttCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGtat                                            >  2:140689/1‑151 (MQ=255)                                                                                                             ttCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGtata                                           <  2:369439/151‑1 (MQ=255)                                                                                                             ttCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGtata                                           >  2:282304/1‑151 (MQ=255)                                                                                                                         tttAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATgg                               >  2:190108/1‑151 (MQ=255)                                                                                                                           tAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTa                             <  2:76390/151‑1 (MQ=255)                                                                                                                              aaTGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAaat                          >  2:3453/1‑151 (MQ=255)                                                                                                                              aaTGAATACACGACTAAAGCCTTAATGTCATGCTACGAATATT‑CC‑GCATGATATTAAGGCTTTGTATTTAGCTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGCGCCATATTCTTTTTGGTATAAATGACGCATGGTAaat                          >  2:376402/1‑151 (MQ=255)                                                                                                                                 gAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAaataat                       <  2:137118/151‑1 (MQ=255)                                                                                                                                    tACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCa                    >  1:391423/1‑151 (MQ=255)                                                                                                                                      cacTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAAt                  <  1:358073/151‑1 (MQ=255)                                                                                                                                       actactAAAGCCTTAATgtcatgctacgaatattgcgcatgatattaaggctttagtagtgtattcattttaaatttaactatgaaattggaatagatgttgatgaagtagtttcattgcttggtttgattttaggcaaggtaatggttaa                   >  1:231222‑M1/1‑17 (MQ=255)                                                                                                                                        ctactaAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTTGTATAAATTACGCATGGTAAATAATGCAATaa                >  2:210920/1‑150 (MQ=255)                                                                                                                                        ctactaAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATAc                >  2:416761/1‑151 (MQ=255)                                                                                                                                         tactaAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACa               >  1:398355/1‑151 (MQ=255)                                                                                                                                           ctaAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATattaaggctttagtagtgtattcattttaaatttaactatgaaattggaatagatgttgatgaagtagtttcattgcttggtttgattttaggcaaggtaatggttaataac             <  1:305302‑M2/151‑113 (MQ=255)                                                                                                                                           ctaAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATc             >  1:54958/1‑151 (MQ=255)                                                                                                                                            taAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATcc            >  2:266526/1‑151 (MQ=255)                                                                                                                                                 ccTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATa       >  1:268363/1‑151 (MQ=255)                                                                                                                                                 ccTTAATGTCATGATACAAATATT‑AC‑GCATGATATTAAGGCTTTGTATCTAACTAAATGAATGGCATGTATTCCGTATCAACCATTTTTCAATGAGCCATATTCACTTTGGCATAAATGACGCATGGTAACTAATGCAATACATCCAAATa       <  2:271672/151‑1 (MQ=255)                                                                                                                                                    tAATGTCATGCTACGAATATT‑GC‑GCATGATattaaggctttagtagtgtattcattttaaatttaactatgaaattggaatagatgttgatgaagtagtttcattgcttggtttgattttaggcaaggtaatggttaataacccattttca    <  1:37050‑M2/151‑122 (MQ=255)                                                                                                                                                      aTGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATACCGCt  <  1:311700/151‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                        TGTTGATAAGCAACATATTACTGCTAGTTTTGAAAATGGGTTATTAACCATTACCTTGCCTAAAATCAAACCAAGCAATGAAACTACTTCATCAACATCTATTCCAATTTCATAGTTAAATTTAAAATGAATACACTACTAAAGCCTTAATGTCATGCTACGAATATT‑GC‑GCATGATATTAAGGCTTTGTATTTAACTAAATGAATGGCATGTATTACATATCAACCGTTTTTCAATGAGCCATATTCTTTTTGGTATAAATGACGCATGGTAAATAATGCAATACATCCAAATACCGCT  >  CP000730/2508298‑2508597

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.