New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2748154 =	15 (0.510)	3 (0.110)	3/282	1.3	17.5%	intergenic (‑119/+75)	acsA2/USA300HOU_2603	acetate‑‑CoA ligase/hypothetical protein
	?	CP000730	2748202 =	14 (0.500)					intergenic (‑167/+27)	acsA2/USA300HOU_2603	acetate‑‑CoA ligase/hypothetical protein
Rejected: Frequency below/above cutoff threshold.

GAAAGGTGCAGATGTAAAAATAATTAATCGTGAATTATCATACAATATTCGTATTGAATTAGCTGATATGGTCTAGCCCGAGATATCAACCCTCAATCATTTGAAAGTCCTTGAATGCTACGTCATGTCAAAGTGTAGTGTCGAGGACTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2748304‑2748154 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggactttCAAATGATTGAGGGTTGATATCTCGGGCTAGACCATATCAGCTAATTCAATACGAATATTGTATGATAATTCACGATTAATTATTTTTACATCTGCACCTTTCGAAGTGCCACGATGCTTGTGTGTATGCTTGTACTCAGCTGAATTTT  >  CP000730/2748202‑2748350                                                                                                                                                                                                                                                                                                              GAAAGGTGCAGATGTAAAAATAATTAATCGTGAATTATCATACAATATTCGTATTGAATTAGCTGATATGGTCTAGCCCGAGATATCAACCCTCAATCATTTGAAAGTCCTTGAATGCTACGTCATGTCAAAGTGTAGTGTCGAGGACTTT                                                                                                                                                       <  1:441946/151‑1                                                                                                  CATTTGAAAGTCCTTGAATGCTACGTCATGTCAAAGTGTAGTGTCGAGGACTTTCAAATGATTGAGGGTTGATATCTCGGGCTAGACCATATCAGCTAATTCAATACGAATATTGTATGATAATTCACGATTAATTATTTTTACATCTGCA                                                      >  1:99838/1‑151                                                                                                      TGAAAGTCCTTGAATGCTACGTCATGTCAAAGTGTAGTGTCGAGGACTTTCAAATGATTGAGGGTTGATATCTCGGGCTAGACCATATCAGCTAATTCAATACGAATATTGTATGATAATTCACGATTAATTATTTTTACATCTGCACCTT                                                  >  1:294798/1‑151                                                                                                                TGAATGCTACGTCATGTCAAAGTGTAGTGTCGAGGACTTTCAAATGATTGAGGGTTGATATCTCGGGCTAGACCATATCAGCTAATTCAATACGAATATTGTATGATAATTCACGATTAATTATTTTTACATCTGCACCTTTCGAAGTGCC                                        >  2:121982/1‑151                                                                                                                                                AGGACTTTGAAATGATTGAGGGTTGATATCTCGGGCTAGACCATATCAGCTAATTCAATACGAATATTGTATGATAATTCACGATTAATTATTTTTACATCTGCACCTTTCGAAGTGCCACGATGCTTGTGTGTATGCTTGTACTCAGCTG        >  2:383525/1‑151                                                                                                                                                      TTCAAATGATTGAGGGTTGATATCTCGGGCTAGACCATATCAGCTAATTCAATACGAATATTGTATGATAATTCACGATTAATTATTTTTACATCTGCACCTTTCGAAGTGCCACGATGCTTGTGTGTATGCTTGTACTCAGCTGAATTTT  >  2:47942/1‑151                                                                                                                                                                                                                                                                                                              GAAAGGTGCAGATGTAAAAATAATTAATCGTGAATTATCATACAATATTCGTATTGAATTAGCTGATATGGTCTAGCCCGAGATATCAACCCTCAATCATTTGAAAGTCCTTGAATGCTACGTCATGTCAAAGTGTAGTGTCGAGGACTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2748304‑2748154 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggactttCAAATGATTGAGGGTTGATATCTCGGGCTAGACCATATCAGCTAATTCAATACGAATATTGTATGATAATTCACGATTAATTATTTTTACATCTGCACCTTTCGAAGTGCCACGATGCTTGTGTGTATGCTTGTACTCAGCTGAATTTT  >  CP000730/2748202‑2748350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.