New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1380507 =	75 (0.850)	4 (0.080) +GGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGT	3/160	10.2	7.6%	intergenic (+2604/‑571)	sbcC/acnA	exodeoxyribonuclease SbcC/aconitate hydratase
	?	CP000730	= 2031785	95 (1.080)					coding (51/291 nt)	USA300HOU_1886	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1380551‑1380507 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAG  <  CP000730/2031785‑2031736                                              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                                                   CTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGTGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTA               >  1:108559/1‑141   AGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGTGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACA             >  1:938837/1‑141      ATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAGGGGCCCCAACATAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGTGTGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGAC          >  1:802386/1‑141             AAAGCTTATTACAAGCGCATTTTCGTTCAGTCAGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGCG‑GGGCCCTAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAG  >  1:528427/1‑141                                                                   TCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGT                                                      >  1:222128/1‑36                                                                   TCGAAAAGAAATTCTACAGGCAATGCGAGTTGGGGT                                                      <  2:222128/36‑1                                              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                                                   CTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1380551‑1380507 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAG  <  CP000730/2031785‑2031736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.