New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 = 55870639 (1.040)11 (0.320) 6/256 4.3 21.2% intergenic (+95/‑5) rrs2/USA300HOU_t0012 16S ribosomal RNA/tRNA‑Ile
?CP000730 2001806 = 46 (1.330)intergenic (‑29/+68) USA300HOU_t0052/rrs3 tRNA‑Ile/16S ribosomal RNA
Rejected: Coverage evenness skew score above cutoff.

GATTGGGGTGAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/558556‑558706
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacattcaaaaCTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCACCCCAATCATTTGTCCCACCTTC  >  CP000730/2001806‑2001944
                                                                                                                                                                                                                                                                                                  
GATTGGGGTGAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTA                                                                                                                                                       >  1:157105/1‑141
  TTGGGGTGAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAAC                                                                                                                                                     >  1:63077/1‑141
      GGTGAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTGCTTTCTAAGGATATATTTGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACGTTC                                                                                                                                                 <  2:360781/141‑1
       GTGAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCA                                                                                                                                                >  1:340112/1‑141
       GTGAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCA                                                                                                                                                <  2:346362/141‑1
       GTGAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCA                                                                                                                                                >  1:41527/1‑141
         GAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAA                                                                                                                                              <  1:401477/141‑1
                                                                   ATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAATGTTCCATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAACTGAATACAATATGTCACATTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATAT                                                                                    >  1:172034/1‑141
                                                                                                          GTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACG                                             >  1:277392/1‑141
                                                                                                                       TTCAGTTTTGAATGTTTATTTAACATTCAAAACTGAATACAATATGTCACATTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTAC                                <  2:172034/141‑1
                                                                                                                                  ATGTTTATTTAACATTCAAAACTGAATACAATAGGTCACATTATTCTGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGGAAGGAGGGGATCCAGCCGCACCTTCCGATACGGCTACCTTGGTACGACTGCACCCC                     >  2:134824/1‑141
                                                                                                                                    GTTTATTTAACATTCAACACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCACCCCAA                   >  2:187727/1‑141
                                                                                                                                    GTTTATTTAACATTCAAAACTGAATACACTATGTCACATTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCACACCAA                   >  2:371321/1‑141
                                                                                                                                    GTTTATTTAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCACCCCAA                   >  1:57225/1‑141
                                                                                                                                      TTATTTAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCACCCCAATC                 >  1:285473/1‑141
                                                                                                                                       TATTTAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCACCCGAATCA                >  2:340667/1‑141
                                                                                                                                       TATTTAACATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCACCCCAATCA                >  1:236149/1‑141
                                                                                                                                       TATTTAACATTCAAAACTGAATACAATATGTCAAATTATTCCACATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAAGAGGTGATCCAGCCGCACTTTCCGATACGGCTACCTTGTTACGACTTCACCCCAATCA                >  2:338017/1‑141
                                                                                                                                            AACATTCAAAAATGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCACCCCAATCATTTGT           >  2:247155/1‑141
                                                                                                                                              CATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCACCCCAATCATTTGTCC         <  2:116960/141‑1
                                                                                                                                               ATTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCACCCCAATCATTTGTCCC        >  1:51173/1‑141
                                                                                                                                                TTCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCACCCCAATCATTTGTCCCA       >  1:73438/1‑141
                                                                                                                                                 TCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGGAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCACCCCAATCATTTGTCCCtc      >  2:82863/1‑139
                                                                                                                                                 TCAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCACCCCAATCATTTGTCCCAC      >  1:85285/1‑141
                                                                                                                                                  CAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCACCCCAATCATTTGTCCCACC     <  2:415054/141‑1
                                                                                                                                                  CAAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCACCCCAATCATTTGTCCCACC     >  1:87922/1‑141
                                                                                                                                                   AAAACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCACCCCAATCATTTGTCCCACCT    <  1:74423/141‑1
                                                                                                                                                     AACTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCACCCCAATCATTTGTCCCACCTTC  <  2:110468/141‑1
                                                                                                                                                                                                                                                                                                  
GATTGGGGTGAAGTCGTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/558556‑558706
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacattcaaaaCTGAATACAATATGTCACGTTATTCCGCATCTTCTGAAGAAGATGTTCCGAATATATCCTTAGAAAGGAGGTGATCCAGCCGCACCTTCCGATACGGCTACCTTGTTACGACTTCACCCCAATCATTTGTCCCACCTTC  >  CP000730/2001806‑2001944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.