New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 558706	39 (1.040)	11 (0.320)	6/256	4.3	21.2%	intergenic (+95/‑5)	rrs2/USA300HOU_t0012	16S ribosomal RNA/tRNA‑Ile
	?	CP000730	2001806 =	46 (1.330)					intergenic (‑29/+68)	USA300HOU_t0052/rrs3	tRNA‑Ile/16S ribosomal RNA
Rejected: Coverage evenness skew score above cutoff.

GTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACTTAGGCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAA  >  CP000730/558571‑558844                                                                                                                                        |                                                                                                                                           gTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATg                                                                                                                                       >  2:201926/1‑141 (MQ=34)          tAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAg                                                                                                                              >  1:91040/1‑141 (MQ=255)          tAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAg                                                                                                                              >  1:120338/1‑141 (MQ=255)            gCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCt                                                                                                                            >  1:235509/1‑141 (MQ=255)                tATCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGc                                                                                                                        <  2:238295/141‑1 (MQ=255)                  tCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTg                                                                                                                      >  1:116246/1‑141 (MQ=255)                         gTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTagag                                                                                                               <  1:176256/141‑1 (MQ=255)                         gTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTagag                                                                                                               >  2:81701/1‑141 (MQ=255)                          tGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAgc                                                                                                              >  1:97108/1‑141 (MQ=255)                              gCTGGATCACCTCCGCTCTAAGGATATATTCGGAACATCTCCTTCAGAAGATGCGGAATAACGTGACATATTGTATTGAGTGTTGAATGTTTATAAAAAAAAAAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCAc                                                                                                          <  2:68878/141‑1 (MQ=17)                                       cctcctTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATaa                                                                                                 >  1:229072/1‑141 (MQ=255)                                             ttCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGAGATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGa                                                                                           >  1:322173/1‑141 (MQ=255)                                               cTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAgg                                                                                         >  1:304730/1‑141 (MQ=255)                                                 aaGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAATGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTc                                                                                       >  1:106070/1‑141 (MQ=255)                                                 aaGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTc                                                                                       >  2:308095/1‑141 (MQ=255)                                                     atatatTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCggtg                                                                                   >  1:35224/1‑141 (MQ=255)                                                               aaCATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTcc                                                                         >  2:415782/1‑141 (MQ=255)                                                                   tcttctTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACtt                                                                     >  1:180903/1‑141 (MQ=255)                                                                   tcttctTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACtt                                                                     >  2:369097/1‑141 (MQ=255)                                                                   tcttctTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACtt                                                                     >  1:155753/1‑141 (MQ=255)                                                                      tcttcAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACTTAgg                                                                  <  1:368811/141‑1 (MQ=255)                                                                               gaTGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACTTAGGCCCACCatt                                                         >  1:31236/1‑141 (MQ=255)                                                                                 tGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACTTAGGCCCACCattat                                                       >  2:75927/1‑141 (MQ=255)                                                                                  gCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACTTAGGCCCACCattatt                                                      >  2:49298/1‑141 (MQ=255)                                                                                         aaCGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACTTAGGCCCACCATTATTTGTACAt                                               <  1:174576/141‑1 (MQ=255)                                                                                            gTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTTATAAGCGTGAGGTCGGTGGTTCGAGTCCACTTAGGCCCACCATTATTTGTACATTGa                                            <  2:69804/141‑1 (MQ=255)                                                                                                       tATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACTTAGGCCCACCATTATTTGTACATTGAAAACTAGAtaa                                 <  2:40273/141‑1 (MQ=255)                                                                                                         ttCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACTTAGGCCCACCATTATTTGTACATTGAAAACTAGAtaagt                               <  2:31236/141‑1 (MQ=255)                                                                                                          tCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACTTAGGCCCACCATTATTTGTACATTGAAAACTAGAtaagta                              >  2:348439/1‑141 (MQ=255)                                                                                                           cAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACTTAGGCCCACCATTATTTGTACATTGAAAACTAGAtaagtaa                             >  1:201062/1‑141 (MQ=255)                                                                                                                  gAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTTAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGTTGGTTCGAGTCCACTCAGGCCCACCATAACTCGTACATTGACAACTAGATAAGTAAGTAAAat                      >  2:306016/1‑141 (MQ=21)                                                                                                                  gAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACTTAGGCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAat                      >  1:34471/1‑141 (MQ=255)                                                                                                                       tttatttaACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACTTAGGCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGa                 >  2:355299/1‑141 (MQ=255)                                                                                                                          atttaACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACTTAGGCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGAttt              >  1:253895/1‑141 (MQ=255)                                                                                                                               aCATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACTTAGGCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCa         >  1:110712/1‑141 (MQ=255)                                                                                                                                  ttCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACTTAGGCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGc      <  1:415054/141‑1 (MQ=255)                                                                                                                                   tCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACTTAGGCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCa     <  2:381289/141‑1 (MQ=255)                                                                                                                                     aaaaaaaTGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACTTAGGCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCaaa   <  2:27192/141‑1 (MQ=255)                                                                                                                                      aaaaaaTGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACTTAGGCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCaaaa  >  2:49998/1‑141 (MQ=255)                                                                                                                                        |                                                                                                                                           GTAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCTAAGGATATATTCGGAACATCTTCTTCAGAAGATGCGGAATAACGTGACATATTGTATTCAGTTTTGAATGTTTATTTAACATTCAAAAAAATGGGCCTATAGCTCAGCTGGTTAGAGCGCACGCCTGATAAGCGTGAGGTCGGTGGTTCGAGTCCACTTAGGCCCACCATTATTTGTACATTGAAAACTAGATAAGTAAGTAAAATATAGATTTTACCAAGCAAAA  >  CP000730/558571‑558844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.