New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	739788 =	47 (1.250)	4 (0.120)	3/252	5.8	9.1%	intergenic (+15/+573)	pitA/sle1	possible PiT family inorganic phosphate transporter/possible LysM domain protein
	?	CP000730	739837 =	37 (1.090)					intergenic (+64/+524)	pitA/sle1	possible PiT family inorganic phosphate transporter/possible LysM domain protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCCATGGAATACATTTATAATATAGCCTCCTAATTAAAATGCTTTGTCTTGGTCATTCTACGTAAATTCTATAAAATATGTTATCTACTTACATAAAAAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/739933‑739788 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaagttcagtttTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTAAAATATATGTAAGAGCAAAAT  >  CP000730/739837‑739975                                                                                                                                                                                                                                                                                               TCCATGGAATACATTTATAATATAGCCTCCTAATTAAAATGCTTTGTCTTGGTCATTCTACGTAAATTCTATAAAATATGTTATCTACTTACATAAAAAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTC                                                                                                                                                  <  2:247746/141‑1     TGGAATACATTTATAATATAGCCTCCTAATTAAAATGCTTTGTCTTGGTCATTCTACGTAAATTCTATAAAATATGTTATCTACTTACATAAAAAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTT                                                                                                                                              <  2:3465/141‑1                                                                                                   aagtttttaTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATTTATTCCA                                                <  2:254607/132‑1                                                                                                      TGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTTTTATGTAATTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGG                                             >  2:48629/1‑141                                                                                                       GAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGA                                            >  2:878/1‑141                                                                                                       GAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGA                                            >  1:316971/1‑141                                                                                                                                      TGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATACTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTAAAATATATGT             >  2:133998/1‑141                                                                                                                                                 TTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGGGGCTAAGTTATAAATTTATTCCATGGAACATAAACAGTTAGGTCATTAAAATATAAGTAAGCGTAAAAT  <  1:21084/141‑1                                                                                                                                                 TTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTAAAATATATGTAAGAGCAAAAT  >  1:231957/1‑141                                                                                                                                                                                                                                                                                               TCCATGGAATACATTTATAATATAGCCTCCTAATTAAAATGCTTTGTCTTGGTCATTCTACGTAAATTCTATAAAATATGTTATCTACTTACATAAAAAACTGAACTTCAATACCACCATATGTTTGTGATACTGAAGTTCAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/739933‑739788 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaagttcagtttTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATGTATTCCATGGAACATAATCAGTTAGGTCATTAAAATATATGTAAGAGCAAAAT  >  CP000730/739837‑739975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.