New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	739788 =	47 (1.250)	4 (0.120)	3/252	5.8	9.1%	intergenic (+15/+573)	pitA/sle1	possible PiT family inorganic phosphate transporter/possible LysM domain protein
	?	CP000730	739837 =	37 (1.090)					intergenic (+64/+524)	pitA/sle1	possible PiT family inorganic phosphate transporter/possible LysM domain protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACCGAGCTAAAGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATG  >  CP000730/739651‑739922                                                                                                                                          |                                                                                                                                       aaCCGAGCTAAAGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAaaactaaac                                                                                                                                     >  2:266186/1‑141 (MQ=255)  aCCGAGCTAAAGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAaaactaaact                                                                                                                                    >  2:21084/1‑141 (MQ=255)    cGAGCTAAAGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGa                                                                                                                                  >  1:161204/1‑141 (MQ=255)           aaGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTAAGCATTGTTAGGAGGTTTACTATTCTATCTACTTAACTTATTTTTCTAATTGAATATAAAACTAAACTGAACTTCAg                                                                                                                           <  2:247354/141‑1 (MQ=255)                 tAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATcac                                                                                                                     <  2:131360/141‑1 (MQ=255)                    aaTGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACaaa                                                                                                                  >  1:269287/1‑141 (MQ=255)                       ggAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACat                                                                                                               >  1:75119/1‑141 (MQ=255)                          gCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATAtg                                                                                                            >  1:59321/1‑141 (MQ=255)                          gCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATAtg                                                                                                            >  1:7316/1‑141 (MQ=255)                            aCTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATAtggt                                                                                                          <  1:30604/141‑1 (MQ=255)                              tGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATAtggtgg                                                                                                        <  2:4456/141‑1 (MQ=255)                               gcgcAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATggtggt                                                                                                       <  2:195739/141‑1 (MQ=255)                                  cAACGAATGATCATTACATGGGTGATTGCATTACTTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTAtt                                                                                                    >  1:95405/1‑141 (MQ=255)                                  cAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTAtt                                                                                                    >  2:123854/1‑141 (MQ=255)                                        aTGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTTAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGtt                                                                                              >  2:293839/1‑141 (MQ=255)                                         tGATCATTACATGGGTGTTTACATTAACTATTTCAGGATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATGTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTc                                                                                             <  2:311490/141‑1 (MQ=255)                                         tGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTc                                                                                             <  2:326764/141‑1 (MQ=255)                                              aTTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGttt                                                                                        <  2:336238/141‑1 (MQ=255)                                              aTTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGttt                                                                                        <  2:397096/141‑1 (MQ=255)                                                tACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGttttt                                                                                      <  2:132699/141‑1 (MQ=255)                                                   aTGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTAt                                                                                   >  2:348390/1‑141 (MQ=255)                                                             acattacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGAt                                                                         >  1:28882/1‑141 (MQ=255)                                                               attacCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATaa                                                                       <  1:237327/141‑1 (MQ=255)                                                                   ccTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACata                                                                   <  1:59438/141‑1 (MQ=255)                                                                    cTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACatat                                                                  <  1:421490/141‑1 (MQ=255)                                                                    cTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACatat                                                                  <  1:410223/141‑1 (MQ=255)                                                                                   tAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACg                                                   >  2:210262/1‑141 (MQ=255)                                                                                    aGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTGATGGAAAATAAAACTAAGCTTAACGTCATTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGt                                                  <  1:37924/141‑1 (MQ=255)                                                                                        ggTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGaa                                              >  2:124597/1‑141 (MQ=255)                                                                                              cTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGATATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCa                                        >  2:183071/1‑141 (MQ=255)                                                                                               tATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCaa                                       >  1:337632/1‑141 (MQ=255)                                                                                                  tCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGAc                                    <  2:215375/141‑1 (MQ=255)                                                                                                   cTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACa                                   <  1:210262/141‑1 (MQ=255)                                                                                                     ttataCTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACaaa                                 <  2:270591/140‑1 (MQ=255)                                                                                                      tataCTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAg                                <  2:325262/141‑1 (MQ=255)                                                                                                           ttaacttaTTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCAttt                           <  1:114624/141‑1 (MQ=255)                                                                                                             aacttaTTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTa                         <  2:305028/141‑1 (MQ=255)                                                                                                              acttaTTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTaa                        >  1:328218/1‑141 (MQ=255)                                                                                                                  aTTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTag                    <  2:59321/141‑1 (MQ=255)                                                                                                                    ttttCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTagga                  >  1:159777/1‑141 (MQ=255)                                                                                                                         tttttttttaTAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATTACTTATTTTATAGTATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCta             >  2:226399/10‑141 (MQ=255)                                                                                                                         tAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCta             >  1:278646/1‑141 (MQ=255)                                                                                                                         tAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCta             >  1:202568/1‑141 (MQ=255)                                                                                                                          aaTTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATAACCAAGACAAAGCATTTTAATTAGGAGGCtat            <  1:277416/141‑1 (MQ=255)                                                                                                                              gAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTAtatta        >  1:258001/1‑141 (MQ=255)                                                                                                                               aaaaTAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTAtattat       >  2:123774/1‑141 (MQ=255)                                                                                                                                    aaaaCTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATg  <  2:161204/141‑1 (MQ=255)                                                                                                                                          |                                                                                                                                       AACCGAGCTAAAGGTGTAAAATGGAGCACTGCGCAACGAATGATCATTACATGGGTGATTACATTACCTATTTCAGCATTGTTAGCAGGTTTACTATTCTATATACTTAACTTATTTTTCTAATTGAAAATAAAACTAAACTGAACTTCAGTATCACAAACATATGGTGGTATTGAAGTTCAGTTTTTTATGTAAGTAGATAACATATTTTATAGAATTTACGTAGAATGACCAAGACAAAGCATTTTAATTAGGAGGCTATATTATAAATG  >  CP000730/739651‑739922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.