New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2665491	46 (1.220)	4 (0.120)	4/256	5.3	8.5%	coding (43/99 nt)	USA300HOU_2520	hypothetical protein
	?	CP000730	= 2665513	44 (1.270)					coding (21/99 nt)	USA300HOU_2520	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAATGCTATAAAGATGATTGATAGTCTTAGCATATCATCACTCCTTTTAAGTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2665341‑2665491 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagaagcatctGTCTGGATCATTAGTACCAGATAGATGCTTCTTAATTATCTCTGAAGAAGTTGAAAGATTTATGGAAAATGCATACTAATCAAAATAGTGATTGCAAAAGCGCCCCCGTATATCTAAAATAACTTAAAAGGAGTGAT  <  CP000730/2665513‑2665377                                                                                                                                                                                                                                                                                                  GAATGCTATAAAGATGATTGATAGTCTTAGCATATCATCACTCCTTTTAAGTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTA                                                                                                                                                     >  1:173897/1‑141  AATGCTATAAAGATGATTGATAGTCTTAGCATATCATCACTCCTTTTAAGTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAA                                                                                                                                                    >  2:96203/1‑141       TATAAAGATGATTGATAGTCTTAGCATATCATCACTCCTTTTAAGTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGC                                                                                                                                               <  2:249759/141‑1           AAGATGATTGATAGTCTTAGCATATCATCACTCCTTTTAAGTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCT                                                                                                                                           >  2:239248/1‑141                                                   GTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTGTCTGGATCATTAGTACCAGATAGATGCTTCTTAATTATC                                                                                                   <  1:48910/141‑1                                                     TATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTGTCTGGATCATTAGTACCAGAT                                                                                                                     <  2:249327/121‑1                                                     TATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTGTCTGGATCATTAGTACCAGAT                                                                                                                     >  1:249327/1‑121                                                      ATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTGTCTGGATCATTAGTACCAGATAGATGCTTCTTAATTATCTCT                                                                                                <  2:151728/141‑1                                                                                                                                              AGAAGCATCTGTCTGGATCATTAGTACCAGATAGATGCTTCTTAATTATCTCTGAAGAAGTTGAAAGATTTATGGAAAATGCATACTAATCAAAATAGTGATTGCAAAAGCGCCCCCGTATATCTAAAATAACTTAAAAGG        >  2:106667/1‑141                                                                                                                                               GAAGCATCTGTCTGGATCATTAGTACCAGATAGATGCTTCTTAATTATCTCTGAAGAAGTTGAAAGATTTATGGAAAATGCATACTAATCAAAATAGTGATTGCAAAAGCGCCCCCGTATATCTAAAATAACTTAAAAGGA       >  1:363724/1‑141                                                                                                                                                   ccTCTGTCTGGATCATTAGTGCCAGATAGATGCTTCTTAATTATCGCTGAAGAAGTTGAAAGATTTATGGAAAATGCATACTAATCAAAATGGTGATTGCAAAAGCGCCCCCGTATATCTAAAATAACTTAAAAGGAGTGg   <  2:215581/139‑2                                                                                                                                                    ATCTGTCTGGATCATTAGTACCAGATAGATGCTTCTTAATTATCTCTGAAGAAGTTGAAAGATTTATGGAAAATGCATACTAATCAAAATAGTGATTGCAAAAGCGCCCCCGTATATCTAAAATAACTTAAAAGGAGTGAT  >  2:226706/1‑141                                                                                                                                                                                                                                                                                                  GAATGCTATAAAGATGATTGATAGTCTTAGCATATCATCACTCCTTTTAAGTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/2665341‑2665491 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagaagcatctGTCTGGATCATTAGTACCAGATAGATGCTTCTTAATTATCTCTGAAGAAGTTGAAAGATTTATGGAAAATGCATACTAATCAAAATAGTGATTGCAAAAGCGCCCCCGTATATCTAAAATAACTTAAAAGGAGTGAT  <  CP000730/2665513‑2665377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.