New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2665491	46 (1.220)	4 (0.120)	4/256	5.3	8.5%	coding (43/99 nt)	USA300HOU_2520	hypothetical protein
	?	CP000730	= 2665513	44 (1.270)					coding (21/99 nt)	USA300HOU_2520	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAGATGATTGATAGTCTTAGCATATCATCACTCCTTTTAAGTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCGCCAGTTGGTGTGCCTGCTAGT  >  CP000730/2665351‑2665630                                                                                                                                             |                                                                                                                                            aaGATGATTGATAGTCTTAGCATATCATCACTCCTTTTAAGTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCatct                                                                                                                                             >  2:239248/1‑141 (MQ=255)       attgatAGGCTTAGCATATCATCACTCCTTTTAAGTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTgg                                                                                                                                       <  2:76547/141‑1 (MQ=255)              gTCTTAGCATATCATCACTCCTTTTAAGTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAAt                                                                                                                                <  1:186927/141‑1 (MQ=255)                    gCATATCATCACTCCTTTTAAGTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCca                                                                                                                          >  1:219087/1‑141 (MQ=255)                           atcaCTCCTTTTAAGTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGAt                                                                                                                   <  2:226706/141‑1 (MQ=255)                            ccaCTCCTTTTAAGTTATTTTAGATATACGGGGGCGCTTTTGCAATCACCATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGCGATAATTAAGAAGCATCTATCTGGCACTAATGATCcagacagagg                                                                                                                  >  2:215581/2‑139 (MQ=255)                              aCTTCTTGTAGGTTATTTTAGCTATAGGGGAGCGTTTTTGTAATTACTATTTTGCTTAGTGTGCCTTTTCCATAACACTTTCAACTTCTACAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGCCAGATGct                                                                                                                <  2:79421/141‑1 (MQ=255)                                tCCTTTTAAGTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGcttc                                                                                                              <  1:363724/141‑1 (MQ=255)                                 ccTTTTAAGTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGcttct                                                                                                             <  2:106667/141‑1 (MQ=255)                                     ttAAGTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCttttt                                                                                                         >  2:137954/1‑141 (MQ=255)                                     ttAAGTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCttttt                                                                                                         >  1:229131/1‑141 (MQ=255)                                       aaGTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCttttttt                                                                                                       >  2:306281/1‑140 (MQ=255)                                        aGTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTAt                                                                                                      >  2:160190/1‑141 (MQ=255)                                         gTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATc                                                                                                     >  1:399904/1‑141 (MQ=255)                                         gTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATc                                                                                                     >  2:251555/1‑141 (MQ=255)                                            aTTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATATGGTACTAATTATCTAGACAGATGCTTCTTTTTTATCAat                                                                                                  >  2:217703/1‑141 (MQ=255)                                              tttAGATATACGGGGGCGCTTTTGCAATCGCTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGGTAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAatat                                                                                                <  2:389347/141‑1 (MQ=255)                                                tggATATACGGGGGCGCTTTTGTAATCATTATTTTGATTAGTATGCCTATTCCATAAATCTTTCAACTTCTTCAGAGCTAATTAGGCGTCATCTATCTGGTCCTGATCCTCCAGACAGATGCTGCTTTTTAATAGATAttt                                                                                              <  2:79847/139‑1 (MQ=255)                                                 agctataCGTGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATAtttt                                                                                             >  2:172201/4‑141 (MQ=255)                                                   atatACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTAt                                                                                           >  1:266667/1‑141 (MQ=255)                                                   atatACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTAt                                                                                           >  1:384280/1‑141 (MQ=255)                                                              cgcTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCat                                                                                >  1:43159/1‑141 (MQ=255)                                                                                tttGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCata                                                              >  1:23361/1‑141 (MQ=255)                                                                                tttGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCata                                                              >  2:354334/1‑141 (MQ=255)                                                                                 ttGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGTTACTAATGATCCATACAGATGCTTCTTTTTTATCAATATTGTATTGTGATCTCATTAATTATTTTTAACCatat                                                             >  2:317778/1‑141 (MQ=255)                                                                                 ttGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTCTATTGTTATCTCATTAATTATTTTTAACCatat                                                             >  2:317763/1‑141 (MQ=255)                                                                                        gTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGc                                                      <  2:322127/141‑1 (MQ=255)                                                                                             cATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGc                                                 >  1:206411/1‑141 (MQ=255)                                                                                              aTTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGcc                                                <  2:258993/141‑1 (MQ=255)                                                                                               ttttCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCa                                               <  1:49601/141‑1 (MQ=255)                                                                                               ttttCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCa                                               <  2:198033/141‑1 (MQ=255)                                                                                                       aaaTCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGAtttt                                       >  2:196887/1‑141 (MQ=255)                                                                                                             ttCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGttt                                 <  1:108728/141‑1 (MQ=255)                                                                                                              tCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTa                                >  1:122774/1‑141 (MQ=255)                                                                                                              tCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTa                                >  2:141154/1‑141 (MQ=255)                                                                                                                    tcttcAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCt                          >  2:332457/1‑141 (MQ=255)                                                                                                                      ttcAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTc                        >  1:81928/1‑141 (MQ=255)                                                                                                                        cAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCGc                      >  1:225202/1‑141 (MQ=255)                                                                                                                                 ttAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCGCCAGTTGgtg             <  1:123750/141‑1 (MQ=255)                                                                                                                                 ttAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCGCCAGTTGgtg             <  1:239248/141‑1 (MQ=255)                                                                                                                                 ttAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCGCCAGTTGgtg             <  2:547/141‑1 (MQ=255)                                                                                                                                 ttAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCGCCAGTTGgtg             <  2:18052/141‑1 (MQ=255)                                                                                                                                        gCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATCGCTTCGCCAGTTGGTGTGCCTGc      <  1:172201/141‑1 (MQ=255)                                                                                                                                          atctatctGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCGCCAGTTGGTGTGCCTGCTa    >  1:14395/1‑141 (MQ=255)                                                                                                                                           tctatctGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCGCCAGTTGGTGTGCCTGCTAg   >  1:123767/1‑141 (MQ=255)                                                                                                                                           tctatctGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCGCCAGTTGGTGTGCCTGCTAg   >  1:123768/1‑141 (MQ=255)                                                                                                                                            ctatctGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCGCCAGTTGGTGTGCCTGCTAGt  <  1:184615/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                            AAGATGATTGATAGTCTTAGCATATCATCACTCCTTTTAAGTTATTTTAGATATACGGGGGCGCTTTTGCAATCACTATTTTGATTAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCGCCAGTTGGTGTGCCTGCTAGT  >  CP000730/2665351‑2665630

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.