New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 329211	51 (0.780)	5 (0.080)	4/238	NT	8.8%	intergenic (+79/+64)	USA300HOU_0295/USA300HOU_0296	hypothetical membrane protein/hypothetical protein
	?	CP000730	= 329244	57 (0.950)					intergenic (+112/+31)	USA300HOU_0295/USA300HOU_0296	hypothetical membrane protein/hypothetical protein

TCAAGACGATAGTGCCACTAGTTGTTACGACTTGGATTATTATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑A‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/329068‑329211 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcgacc‑aGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTCTCTACATTCCCCATTAATCAAAATCGTTTACGAAAGTATAATTGTAGCTATAATA  <  CP000730/329244‑329105                                                                                                                                                                                                                                                                                               TCAAGACGATAGTGCCACTAGTTGTTACGACTTGGATTATTATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGA                                                                                                                                                  <  2:56654/141‑1   AAGACGATAGTGCCACTAGTTGTTACGACTTGGATTATTATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC                                                                                                                                                <  1:475718/141‑1   AAGACGATAGTGCCACTAGTTGTTACGACTTGGATTATTATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC                                                                                                                                                <  2:143041/141‑1   AAGACGATAGTGCCACTAGTTGTTACGACTTGGATTATTATAGCTACAATTATACTTGCTTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC                                                                                                                                                <  1:50402/141‑1           AGTGCCACTAGTTGTTACGACTTGGATTATTATAGCTACGATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AGTTCGCA                                                                                                                                       >  2:704758/1‑141                            CGACTTGGATTATTATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTTTACAATTCGTAAC                                                                                                                       <  2:163916/141‑1                                     TTATTATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAAAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAAT                                                                                                             <  1:541086/141‑1                                         TATAGCTACGATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGT                                                                                                         <  1:704758/141‑1                                          ATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTC                                                                                                        <  1:775803/141‑1                                                                                                                                        AAGCGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATGGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTCTCTACATTCCCCATTAATCAAAATCGTTTACGAAAGTATAATTGTAG          <  2:751148/141‑1                                                                                                                                          GCGACC‑AGTTCGCAGTTTACACTTCGTATCACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTCTCTACATTCCCCATTAATCAAAATCGTTTACGAAAGTATGATTGTAGCT        <  2:500931/141‑1                                                                                                                                           CGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTCTCTACATTCCCCATTAATCAAAATCGTTTACGAAAGTATAATTGTAGCTA       <  2:585055/141‑1                                                                                                                                           CGACC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTCTCTACATTCCCCATTAATCAAAATCGTTTACGAAAGTATAATTGTAGCTA       >  2:300631/1‑141                                                                                                                                              CC‑AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTCTCTACATTCCCCATTAATCAAAATCGTTTACGAAAGTATAATTGTAGCTATAA    >  2:642677/1‑141                                                                                                                                                 AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTCTCTACATTCCCCATTAATCAAAATCGTTTACGAAAGTATAATTGTAGCTATAATA  >  2:506295/1‑141                                                                                                                                                 AGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTCTCTACATTCCCCATTAATCAAAATCGTTTACGAAAGTATAATTGTAGCTATAATA  <  1:723027/141‑1                                                                                                                                                                                                                                                                                               TCAAGACGATAGTGCCACTAGTTGTTACGACTTGGATTATTATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑A‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/329068‑329211 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcgacc‑aGTTCGCAGTTTACAATTCGTAACACTGCAAAATTGGTCGCTTTATTTTGTATGTTATTCGATTATAAAATTACAAAGAAATGTTCTCTACATTCCCCATTAATCAAAATCGTTTACGAAAGTATAATTGTAGCTATAATA  <  CP000730/329244‑329105

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.