New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 329211	51 (0.780)	5 (0.080)	4/238	NT	8.8%	intergenic (+79/+64)	USA300HOU_0295/USA300HOU_0296	hypothetical membrane protein/hypothetical protein
	?	CP000730	= 329244	57 (0.950)					intergenic (+112/+31)	USA300HOU_0295/USA300HOU_0296	hypothetical membrane protein/hypothetical protein

GATAGTGCCACTAGTTGTTACGACTTGGATTATTATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCAATCCAGT  >  CP000730/329075‑329351                                                                                                                                          |                                                                                                                                             gATAGTGCCACTAGTTGTTACGACTTGGATTATTATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGTGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AAttt                                                                                                                                          >  1:267900/1‑141 (MQ=255) gATAGTGCCACTAGTTGTTACGACTTGGATTATTATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AAttt                                                                                                                                          <  2:56622/141‑1 (MQ=255) gATAGTGCCACTAGTTGTTACGACTTGGATTATTATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AAttt                                                                                                                                          <  2:304545/141‑1 (MQ=255) gATAGTGCCACGAGTTGTTACGACTTGGATTATTATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAAATGTATAATCGAATAACATACAAAATAAATCTACC‑AAttt                                                                                                                                          >  1:553354/1‑141 (MQ=255)  aTAGTGCCACTAGTTGTTACGACTTGGATTATTATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AAtttt                                                                                                                                         <  1:593610/141‑1 (MQ=255)  aTAGTGCCACTAGTTGTTACGACTTGGATTATTATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AAtttt                                                                                                                                         >  2:432937/1‑141 (MQ=255)    aGTGCCACTAGTTGTTACGACTTGGATTATTATAGCTACGATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑Agttcgca                                                                                                                                       >  2:704758‑M1/1‑134 (MQ=255)    aGTGCCACTAGTTGTTACGACTTGGATTATTATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AAttt                                                                                                                                          >  1:775959/1‑138 (MQ=255)    aGTGCCACTAGTTGTTACGACTTGGATTATTATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AAttt                                                                                                                                          <  2:775959/138‑1 (MQ=255)     gTGCCACTAGTTGTTACGACTTGGATTATTATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCa                                                                                                                                      >  2:606883/1‑141 (MQ=255)      tGCCACTAGTTGTTACGACTTGGATTATTATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAg                                                                                                                                     <  1:764487/141‑1 (MQ=255)       gCCACTAGTTGTTACGACTTGGATTATTATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAgt                                                                                                                                    <  1:595055/141‑1 (MQ=255)                     cGACTTGGATTATTATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACCAAttttgcagtttacaattcgtaac                                                                                                                       <  2:163916‑M1/141‑24 (MQ=255)                           ggATTATTATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTACACTACg                                                                                                                >  1:396999/1‑141 (MQ=255)                              ttattaTAGCTACTATTGTACTTTCGTAAACGATTTTGATTAATGGCGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCTACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAAc                                                                                                             <  1:402147/141‑1 (MQ=255)                              ttattaTAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAAAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑Agttcgcagtttacaattcgtaacactgcaaaat                                                                                                             <  1:541086‑M1/141‑34 (MQ=255)                               tattatAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACt                                                                                                            <  1:723027‑M2/141‑2 (MQ=255)                               tattatAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACt                                                                                                            >  2:506295‑M2/1‑140 (MQ=255)                                 ttatAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACtgg                                                                                                          >  2:642677‑M2/1‑138 (MQ=255)                                  tataGCTACGATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑Agttcgcagtttacaattcgtaacactgcaaaattggt                                                                                                         <  1:704758‑M1/141‑38 (MQ=255)                                   ataGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑Agttcgcagtttacaattcgtaacactgcaaaattggtc                                                                                                        <  1:775803‑M1/141‑39 (MQ=255)                                    taGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACtggtcg                                                                                                       <  2:585055‑M2/141‑7 (MQ=255)                                    taGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACtggtcg                                                                                                       >  2:300631‑M2/1‑135 (MQ=255)                                     aGCTACAATCATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGATACGAAGTGTAAACTGCGAACtggtcgc                                                                                                      <  2:500931‑M2/141‑8 (MQ=255)                                       cTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑CATTTTGCAGTGTTACGAATTGTAAACTGCGAACtggtcgctt                                                                                                    <  2:751148‑M2/141‑10 (MQ=255)                                            aTTATACTTTCGTAAACGATTTTGATTAATGTGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTAt                                                                                               <  2:267900/141‑1 (MQ=255)                                               ataCTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGa                                                                                            >  2:286748/1‑141 (MQ=255)                                                taCTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAGCTGCGAACTTGGCGCTTTTTATTGAt                                                                                           >  2:623509/1‑141 (MQ=255)                                                  ttttCTTAAACGATTTTGATCAATGGGGAATGCAGAGAACATTTCTTTGTAATTTTATACTCCAATAACATACAAAAGAAAGCGACC‑AATTGTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGt                                                                                         <  2:479003/140‑1 (MQ=255)                                                  cTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGt                                                                                         >  1:32552/1‑141 (MQ=255)                                                  cTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGt                                                                                         >  2:390863/1‑141 (MQ=255)                                                  cTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGt                                                                                         >  1:482247/1‑141 (MQ=255)                                                    ttCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCa                                                                                       <  2:297757/141‑1 (MQ=255)                                                       gTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGa                                                                                    >  1:52087/1‑141 (MQ=255)                                                            cGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTGGCCTTTTATTGATGTCATGAttaat                                                                               >  1:441338/1‑141 (MQ=255)                                                            cGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGAttaat                                                                               <  1:141830/141‑1 (MQ=255)                                                              aTTTTGATTAATGGGGAATGTAGAGAACATTTGTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGAttaattt                                                                             <  1:348901/141‑1 (MQ=255)                                                                 ttGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGAttaatttaat                                                                          >  1:704886/1‑141 (MQ=255)                                                                  tGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATg                                                                         >  2:36457/1‑141 (MQ=255)                                                                    aTTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGa                                                                       <  2:307454/141‑1 (MQ=255)                                                                      tAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTAGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATg                                                                     <  1:612546/141‑1 (MQ=255)                                                                        aTGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTa                                                                   <  2:275842/141‑1 (MQ=255)                                                                          ggggAATGTAGAGAACATTTCTTTGTAATTTTGTAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAAt                                                                 <  2:236123/141‑1 (MQ=255)                                                                          ggggAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAAt                                                                 >  2:202489/1‑141 (MQ=255)                                                                            ggAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGAGGTAATta                                                               >  1:509731/1‑141 (MQ=255)                                                                              aaTGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATtata                                                             >  1:711248/1‑141 (MQ=255)                                                                               aTGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTatat                                                            >  2:371672/1‑141 (MQ=255)                                                                                 gTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATatga                                                          >  1:570993/1‑141 (MQ=255)                                                                                   agagAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATatgatg                                                        >  2:317367/1‑141 (MQ=255)                                                                                   agagAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATatgatg                                                        >  2:317463/1‑141 (MQ=255)                                                                                      gaACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGaaa                                                     <  1:503277/141‑1 (MQ=255)                                                                                       aaCATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAAc                                                    >  1:179926/1‑141 (MQ=255)                                                                                              cTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGaa                                             <  1:71738/141‑1 (MQ=255)                                                                                                ttGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGc                                           >  2:682313/1‑141 (MQ=255)                                                                                                 tGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCa                                          <  2:733186/141‑1 (MQ=255)                                                                                                   tAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCaga                                        <  2:642418/141‑1 (MQ=255)                                                                                                   tAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCaga                                        >  1:10440/1‑141 (MQ=255)                                                                                                      ttttATAATCGAATAACATACAACATAAAGCGACC‑AATTTTGGAGTGTTACGTATTGTAAATTGTGAACTGGTCGCTTTTTATTGATGGCATGATTAATTCAATGGATGTAATTATATGATGAAACTTCTGAGGCAGAGAt                                     <  2:674978/141‑1 (MQ=255)                                                                                                      ttttATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGAt                                     <  2:382810/141‑1 (MQ=255)                                                                                                       tttATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATg                                    <  2:68781/141‑1 (MQ=255)                                                                                                       tttATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATg                                    <  2:342715/141‑1 (MQ=255)                                                                                                              tCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTtg                             >  2:226214/1‑141 (MQ=255)                                                                                                               cGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTtga                            <  2:774094/141‑1 (MQ=255)                                                                                                                       aTACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGa                    >  2:386087/1‑141 (MQ=255)                                                                                                                       aTACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGa                    >  1:630591/1‑141 (MQ=255)                                                                                                                          cAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGatat                 <  2:79887/141‑1 (MQ=255)                                                                                                                            aaaTAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGatatat               <  2:723027/141‑1 (MQ=255)                                                                                                                               tAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCa            >  2:513409/1‑141 (MQ=255)                                                                                                                                 aaGCGACC‑Agttcgcagtttacaattcgtaacactgcaaaatgggtcgctttattttgtatgttattcgattataaaattacaaagaaatgttctctacattccccattaatcaaaatcgtttacgaaagtataattgtag          <  2:751148‑M1/141‑133 (MQ=255)                                                                                                                                  aGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCa         >  2:401960/1‑141 (MQ=255)                                                                                                                                   gCGACC‑Agttcgcagtttacacttcgtatcactgcaaaattggtcgctttattttgtatgttattcgattataaaattacaaagaaatgttctctacattccccattaatcaaaatcgtttacgaaagtatgattgtagct        <  2:500931‑M1/141‑135 (MQ=255)                                                                                                                                   gCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCaa        >  2:487038/1‑141 (MQ=255)                                                                                                                                   gCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCaa        <  1:17903/141‑1 (MQ=255)                                                                                                                                    cGACC‑Agttcgcagtttacaattcgtaacactgcaaaattggtcgctttattttgtatgttattcgattataaaattacaaagaaatgttctctacattccccattaatcaaaatcgtttacgaaagtataattgtagcta       <  2:585055‑M1/141‑136 (MQ=255)                                                                                                                                    cGACC‑Agttcgcagtttacaattcgtaacactgcaaaattggtcgctttattttgtatgttattcgattataaaattacaaagaaatgttctctacattccccattaatcaaaatcgtttacgaaagtataattgtagcta       >  2:300631‑M1/1‑6 (MQ=255)                                                                                                                                     gACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACtggtcgctttattttgtatgttattcgattataaaattacaaagaaatgttctctacattccccattaatcaaaatcgtttacgaaagtataattgtagctat      <  1:775803‑M2/141‑104 (MQ=255)                                                                                                                                      aCC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACtggtcgctttattttgtatgttattcgattataaaattacaaagaaatgttctctacattccccattaatcaaaatcgtttacgaaagtataatcgtagctata     <  1:704758‑M2/141‑105 (MQ=255)                                                                                                                                       cc‑Agttcgcagtttacaattcgtaacactgcaaaattggtcgctttattttgtatgttattcgattataaaattacaaagaaatgttctctacattccccattaatcaaaatcgtttacgaaagtataattgtagctataa    >  2:642677‑M1/1‑3 (MQ=255)                                                                                                                                          agttcgcagtttacaattcgtaacactgcaaaattggtcgctttattttgtatgttattcgattataaaattacaaagaaatgttctctacattccccattaatcaaaatcgtttacgaaagtataattgtagctataata  <  1:723027‑M1/141‑141 (MQ=255)                                                                                                                                          agttcgcagtttacaattcgtaacactgcaaaattggtcgctttattttgtatgttattcgattataaaattacaaagaaatgttctctacattccccattaatcaaaatcgtttacgaaagtataattgtagctataata  >  2:506295‑M1/1‑1 (MQ=255)                                                                                                                                          |                                                                                                                                             GATAGTGCCACTAGTTGTTACGACTTGGATTATTATAGCTACAATTATACTTTCGTAAACGATTTTGATTAATGGGGAATGTAGAGAACATTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACC‑AATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTGATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACCAATCCAGT  >  CP000730/329075‑329351

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.