| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 370467 = | 60 (0.920) | 4 (0.070) | 4/234 | NT | 7.7% | intergenic (+15/+112) | nanE/USA300HOU_0339 | N‑acylglucosamine‑6‑phosphate 2‑epimerase/hypothetical membrane protein |
| ? | CP000730 | 370547 = | 41 (0.690) | intergenic (+95/+32) | nanE/USA300HOU_0339 | N‑acylglucosamine‑6‑phosphate 2‑epimerase/hypothetical membrane protein | |||||
CATCCCCGTCGCTTTACTTATTTTTGGATAAAGTTGAAAATAAAATCACTATCATAAACAAACAAAACGAGATGAACCCATTACATTCATTCAGCCACCTAAGATAATTAGGTGCCTTTAATTAATGATGGTCATCTCGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/370609‑370467‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatctcgttttGTTTGTTTATGATAGTGATTTTATTTTCAACTTTATCCAAAAATAAGTAAAGCGACGGGGATGGTGATTAATAGCGACAACGCCACGCGTAAAAACCAAATGATGATGAGTTTCCAGACAGGTATTTTAATTT > CP000730/370547‑370679 CATCCCCGTCGCTTTACTTATTTTTGGATAAAGTTGAAAATAAAATCACTATCATAAACAAACAAAACGAGATGAACCCATTACATTCATTCAGCCACCTAAGATAATTAGGTGCCTTTAATTAATGATGGTCATCTCGTT < 2:566545/141‑1CATCCCCGTCGCTTTACTTATTTTTGGATAAAGTTGAAAATAAAATCACTATAAAAAACAAAAAAAACGAGATGAACCCATTACATTCATTCAGCCACCTAAGATAATTAGGTGCCTTTAATTAATGATGGTCATCTCGTT < 2:566586/141‑1 CTATCATAAACAAACAAAACGAGATGAACCCATTACATTCATTCAGCCACCTAAGATAATTAGGTGCCTTTAATTAATGATGGTCATCTCGTTTTGTTTGTTTATGATAGTGATTTTATTTTCAACTTTATCCAAAAATAA > 1:771944/1‑141 CATAAACAAACAAAACGAGATGAACCCATTACATTCATTCAGCCACCTAAGATAATTAGGTGCCTTTAATTAATGATGGTCATCTCGTTTTGTTTGTTTATGATAGTGATTTTATTTTCAACTTTATCCAAAAATAAGTAA < 2:771944/141‑1 AGATGAACCCATTACATTCATTCAGCCACCTAAGATAATTAGGTGCCTTTAATTAATGATGGTCATCTCGTTTTGTTTGTTTATGATAGTGATTTTATTTTCAACTTTATCCAAAAATAAGTAAAGCGACGGGGATGGTGA > 2:17232/1‑141 ACATTCATTCAGCCACCTAAGATAATTAGGTGCCTTTAATTAATGATGGTCATCTCGTTTTGTTTGTTTATGATAGTGATTTTATTTTCAACTTTATCCAAAAATAAGTAAAGCGACGGGGATGGTGATTAATAGCGACAA > 1:347141/1‑141 TCATCTCGTTTTGTTTGTTTATGATAGTGATTTTATTTTCAACTTTATCCAAAAATAAGTAAAGCGACGGGGATGGTGATTAATAGCGACAACGCCACGCGTAAAAACCAAATGATGATGAGTTTCCAGACAGGTATTTTA > 2:173376/1‑141 CATCTCGTTTTGTTTGTTTATGATAGTGATTTTATTTTCAACTTTATCCAAAAATAAGTAAAGCGACGGGGATGGTGATTAATAGCGACAACGCCACGCGTAAAAACCAAATGATGATGAGTTTCCAGACAGGTATTTTAA > 2:233210/1‑141 TCTCGTTTTGTTTGTTTCTGATAGTGATTTTATTTTCAACTGTATCCAAAAATAAGTAAAGCGACGGGGATGGTGATTAATAGCGACAACGCCACGCGTAAAAACCAAATGATGATGAGTTTCCAGACAGGTATTTTAATT < 2:393532/141‑1 CTCGTTTTGTTTGTTTATGATAGTGATTTTATTTTCAACTTTATCCAAAAATAAGTAAAGCGACGGGGATGGTGATTAATAGCGACAACGCCACGCGTAAAAACCAAATGATGATGAGTTTCCAGACAGGTATTTTAATTT < 1:22325/141‑1 TCGTTTTGTTTGTTTATGATAGTGATTTTATTTTCAACTTTATCCAAAA > 2:527498/1‑49 TCGTTTTGTTTGTTTATGATAGTGATTTTATTTTCAACTTTATCCAAAA < 1:527498/49‑1 CATCCCCGTCGCTTTACTTATTTTTGGATAAAGTTGAAAATAAAATCACTATCATAAACAAACAAAACGAGATGAACCCATTACATTCATTCAGCCACCTAAGATAATTAGGTGCCTTTAATTAATGATGGTCATCTCGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/370609‑370467‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatctcgttttGTTTGTTTATGATAGTGATTTTATTTTCAACTTTATCCAAAAATAAGTAAAGCGACGGGGATGGTGATTAATAGCGACAACGCCACGCGTAAAAACCAAATGATGATGAGTTTCCAGACAGGTATTTTAATTT > CP000730/370547‑370679 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |