New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	720538 =	78 (1.200)	4 (0.060)	4/246	NT	5.3%	intergenic (+148/‑107)	nupC2/USA300HOU_0666	CNT family concentrative nucleoside transporter/hypothetical protein
	?	CP000730	720578 =	70 (1.130)					intergenic (+188/‑67)	nupC2/USA300HOU_0666	CNT family concentrative nucleoside transporter/hypothetical protein

GAAGTTATCTCCTTTGTGTTGTTTATAATAACAAAACAAATTTTGCTCGAAGTACTATGACTGTACCTAGTCCTTACTGTCATATGTACAATAATATTCATTTCCCATAAAAGCCAAGTGTATTACCATGTGCACTTGGTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/720683‑720538 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttatGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAATTTGTTTTGTTATTATAAACAACACAAAGGAGATAACTTCTCT  >  CP000730/720578‑720686                                                                                                                                                                                                                                                                 GAAGTTATCTCCTTTGTGTTGTTTATAATAACAAAAAAAATTTTGCTCGAAGTACTATGACTGTACCTAGTCCTTACTGTCATATGTACAATAATATTCATTTTCCATAAAAGCCAAGTGTATTACCCTGTGCACTTGGTT                                                                                                                    >  1:452720/1‑141  AAGTTATCTCCTTTGTGTTGTTTATAATAACAAAACAAATTTTGCTCGAAGTACTATGACTGTACCTAGTCCTTACTGTCATATGTACAATAATATTCATTTCCCATAAAAGCCAAGTGTATTACCATGTGCACTTGGTTT                                                                                                                   >  1:395098/1‑141   AGTTATCTCCTTTGTGTTGTTTATAATAACAAAACAAATTTTGCTCGAAGTACTATGACTGTACCTAGTCCTTACTGTCATATGTACAATAATATTCATTTCCCATAAAAGCCAAGTGTATTACCATGTGCACTTGGTTTT                                                                                                                  <  1:603217/141‑1   AGTTATCTCCTTTGTGTTGTTTATAATAACAAAACAAATTTTGCTCGAAGTACTATGACTGTACCTAGTCCTTACTGTCATATGTACAATAATATTCATTTCCCATAAAAGCCAAGTGTATTACCATGTGCACTTGGTTTT                                                                                                                  >  2:91483/1‑141   AGTTATCTCCTTTGTGTTGTTTATAATAACAAAACAAATTTTGCTCGAAGTACTATGACTGTACCTAGTCCTTACTGTCATATGTACAATAATATTCATTTCCCATAAAAGCCAAGTGTATTACCATGTGCACTTGGTTTT                                                                                                                  <  1:229237/141‑1    GTTATCTCCTTTGTGTTGTTTATAATAACAAAACAAATTTTGCTCGAAGTACTATGACTGTACCTAGTCCTTACTGTCATATGTACAATAATATTCATTTCCCATAAAAGCCAAGTGTATTACCATGTGCACTTGGTTTTT                                                                                                                 <  1:386363/141‑1    GTTATCTCCTTTGTGTTGTTTATAATAACAAAACAAATTTTGCTCGAAGTACTATGACTGTACCTAGTCCTTACTGTCATATGTACAATAATATTCATTTCCCATAAAAGCCAAGTGTATTACCATGTGCACTTGGTTTTT                                                                                                                 >  1:287285/1‑141                                                                                                                  CCAAGTGTATTACCATGTGCACGTGGTTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAATTTGTTTTGTTATTATAAACAACACAAAGGAGATAACTTCTC   >  2:555234/1‑141                                                                                                                   CAAGTGTATTACCATGTGCACTTGGTTTTTATGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAATTTGTTTTGTTATTATAAACAACACAAAGGAGATAACTTCTCT  >  1:78610/1‑141                                                                                                                        GTATTACCATGTGCACTTGGTTTTTATGGGAAATGAATATTATTGTACA                                                                                         <  1:650769/49‑1                                                                                                                        GTATTACCATGTGCACTTGGTTTTTATGGGAAATGAATATTATTGTACA                                                                                         >  2:650769/1‑49                                                                                                                                                                                                                                                                 GAAGTTATCTCCTTTGTGTTGTTTATAATAACAAAACAAATTTTGCTCGAAGTACTATGACTGTACCTAGTCCTTACTGTCATATGTACAATAATATTCATTTCCCATAAAAGCCAAGTGTATTACCATGTGCACTTGGTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/720683‑720538 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttatGGGAAATGAATATTATTGTACATATGACAGTAAGGACTAGGTACAGTCATAGTACTTCGAGCAAAATTTGTTTTGTTATTATAAACAACACAAAGGAGATAACTTCTCT  >  CP000730/720578‑720686

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.