| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 782409 = | 60 (0.920) | 3 (0.050) | 3/246 | NT | 4.9% | intergenic (‑204/+138) | USA300HOU_0730/USA300HOU_0731 | hypothetical membrane protein/hypothetical lipoprotein |
| ? | CP000730 | 782460 = | 59 (0.950) | intergenic (‑255/+87) | USA300HOU_0730/USA300HOU_0731 | hypothetical membrane protein/hypothetical lipoprotein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAAAATAATCAATTTCTGAGTTAAACTTTTATTTACAACATACTATTACTATACATTACAAATTTTTAAAATATACATTACACTCATTACTCAATGGAAAGCGTATGATTTCACAGCCCCCCTAGCTTGTAGAAATCATA‑‑CTTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/782554‑782409‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttccATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAATTGATTATTTTAATTTAGCGCCGCCGAAGATGACGTGAGCTTTTTTACAATAGATT > CP000730/782460‑782598 TAAAATAATCAATTTCTGAGTTAAACTTTTATTTACAACATACTATTACTATACATTACAAATTTTTAAAATATACATTACACTCATTACTCAATGGAAAGCGTATGATTTCACAGCCCCCCTAGCTTGTAGAAATCATA‑‑C < 2:437344/141‑1TAAAATAATCAATTTCTGAGTTAAACTTTTATTTACAACATACTATTACTATACATTACAAATTTTTAAAATATACATTACACTCATTACTCAATGGAAAGCGTATGATTTCACAGCCCCCCTAGCTTGTAGAAATCATA‑‑C < 2:372458/141‑1 AAATAATCAATTTCTGAGTTAAACTTTTATTTACAACATACTATTACTATACATTACAAATTTTTAAAATATACATTACACTCATTACTCAATGGAAAGCGTATGATTTCACAGCCCCCCTAGCTTGTAGAAATCATA‑‑CTT < 2:26427/141‑1 AAATAATCAATTTCTGAGTTAAACTTTTATTTACAACATACTATTACTATACATTACAAATTTTTAAAATATACATTACACTCATTACTCAATGGAAAGCGTATGATTTCACAGCCCCCCTAGCTTGTAGAAATCATA‑‑CTT < 2:104047/141‑1 ATAATCAATTTCTGAGTTAAACTTTTATTTACAACATACTATTACTATACATTACAAACTTTTAAAATATACATTACACTCATTACTCAATGGAAAGCGTATGATTTCACAGCCCCCCTAGCTTGTAGAAATCATA‑‑CTTTC < 2:661394/141‑1 ATTACTCAATGGAAAGCGTATGATTTCACAGCCCCCCTAGCTTGTAGAAATCATA‑‑CTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAG > 1:607714/1‑141 AGCGTATGATTTCACAGCCCCCCTAGCTTGTAGAAATCATA‑‑CTTTCCATTGAGTAATGAGTGTACTGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAATTGATTATTTT > 2:270634/1‑141 TGATTTCACAGCCCCCCTAGCTTGTAGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAATTGATTATTTTAATT > 1:116075/1‑141 TTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAATTGATTATTTTAATTTAGCGCCGCCGAAGATGACGTGAGCTTTTTTACAATAG < 1:214502/141‑1 TTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAATTGATTATTTTAATTTAGCGCCGCCGAAGATGACGTGAGCTTTTTTACAATAG < 2:159645/141‑1 TTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTTTAAATAAAAGTTTAACTCAGAAATTGATTATTTTAATTTAGCGCCGCCGAAGATGACGTGAGCTTTTTTACAATAGA > 2:106809/1‑141 CCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGAACATAAAAGTTTAACTCAGAAATTGATTATTTTAATTTAGCGCCGCCGAAGATGACGTGAGCTTTTTTACAATAGATT < 1:374289/141‑1 TAAAATAATCAATTTCTGAGTTAAACTTTTATTTACAACATACTATTACTATACATTACAAATTTTTAAAATATACATTACACTCATTACTCAATGGAAAGCGTATGATTTCACAGCCCCCCTAGCTTGTAGAAATCATA‑‑CTTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/782554‑782409‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttccATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAGAAATTGATTATTTTAATTTAGCGCCGCCGAAGATGACGTGAGCTTTTTTACAATAGATT > CP000730/782460‑782598 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |