New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	917316 =	67 (1.030)	3 (0.050)	4/236	NT	5.2%	intergenic (+75/‑115)	sufB/USA300HOU_0876	ABC superfamily ATP binding cassette transporter, membrane protein/hypothetical protein
	?	CP000730	917342 =	48 (0.800)					intergenic (+101/‑89)	sufB/USA300HOU_0876	ABC superfamily ATP binding cassette transporter, membrane protein/hypothetical protein

TCATGTTGTATTTGTGTTGTCGCTTTATCCACCATCAATGATTATTTTTTACACCAATCAAAAAATCGAACTGATATAAATAAGTACAAAGCTTATCTATCAATCCGATTTAGTTATAAAACAAAAAAAGCCACAGTAATGTGGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/917465‑917316 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtggctttttTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGGTGTAAAAAATAATCATTGATGGTGGATAAAGCGACAACACAAATACAACATGATTGTGGCATTAGA  >  CP000730/917342‑917478                                                                                                                                                                                                                                                                                                 TCATGTTGTATTTGTGTTGTCGCTTTATCCACCATCAATGATTATTTTTTACACCAATCAAAAAATCGAACTGATATAAATAAGTACAAAGCTTATCTATCAATCCGATTTAGTTATAAAACAAAAAAAGCCACAGTAATG                                                                                                                                                    <  1:24820/141‑1    TGTTGTATTTGTGTTGTCGCTTTATCCACCATCAATGATTATTTTTTACACCAATCAAAAAATCGAACTGATATAAATAAGTACAAAGCTTATCTATCAATCCGATTTAGTTATAAAACAAAAAAAGCCACAGTAATGTGG                                                                                                                                                 >  1:157085/1‑141     GTTGTATTTGTGTTGTCGCTTTATCCACCATCAATGATTATTTTTTACACCAATCAAAAAATCGAACTGATATAAATAAGTACAAAGCTTATCTATCAATCCGATTTAGTTATAAAACAAAAAAAGCCACAGTAATGTGGC                                                                                                                                                <  2:715653/141‑1     GTTGTATTTGTGTTGTCGCTTTATCCACCATAAATGATTATTTTTTACTCCAATCAAAAAATCGAACTGATATAAATAAGTACAAAGCTTATCTATCAATCCGATTTAGTTATAAAACAAAAAAAGCCACAGTAATGTGGC                                                                                                                                                <  2:91852/141‑1       TGTATTTTTGTTGTCGCTTTATCCACCATCAATGATTATTTTTTACACCAATCAAAAAATCGAACTGATATAAATAAGTACAAAGCTTATCTATCAATCCGATTTAGTTATAAAACAAAAAAAGCCACAGTAATGTGGCTT                                                                                                                                              <  2:57521/141‑1          ATTTGTGTTGTCGCTTTATCCACCATCAATGATTATTTTTTACACCAATCAAAAAATCGAACTGATATAAATAAGTACAAAGCTTATCTATCAATCCGATTTAGTTATAAAACAAAAAAAGCCACATTACTGTGGCTTTTT                                                                                                                                           >  2:408888/1‑141           ttggttTTGACGCTCTATCCACCATCAATGATTATTATTTACAACAAACAAATAATCGAACTGATATAAATAAGAACAAAGCTGATGTATCTATCCGATTTAGTTATAAAACAAAAAAAGCCACCGTAATGTGGCTTTTTg                                                                                                                                          <  2:667081/135‑2                                                                    aAACTGATATAAATAAGTACAAAGCTTATCTATCAATCCGATTTAGTTATAAAACAAAAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCG                                                                                 <  2:497105/140‑1                                                                         GATATAAATAAGTACAAAGCTTATCTATCAATCCGATTTAGTTATAAAACAAAAAAAGCCACATTACTGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGACAAGCTTTGTACTTATTTATATCAGTTCGATTTT                                                                            <  1:408888/141‑1                                                                                                                                     ACAGTAATGTGGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGGTGTAAAAAATAATCATTGATGGTGGATAAAGCGACAACACAAATACAACATG                >  1:530946/1‑141                                                                                                                                               GGCTTTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGGTGTAAAAAATAATCATTGATGGTGGATAAAGCGACAACACAAATACAACATGATTGTGGCAT      <  1:186052/141‑1                                                                                                                                                   TTTTTTGTTTTATAACTAAATCGGATTGATAGATAAGGTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGGTGTAAAAAATAATCATTGATGGTGGATAAAGCGACAACACAAATACAACATGATTGTGGCATTAGA  <  1:319920/141‑1                                                                                                                                                                                                                                                                                                 TCATGTTGTATTTGTGTTGTCGCTTTATCCACCATCAATGATTATTTTTTACACCAATCAAAAAATCGAACTGATATAAATAAGTACAAAGCTTATCTATCAATCCGATTTAGTTATAAAACAAAAAAAGCCACAGTAATGTGGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/917465‑917316 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtggctttttTTGTTTTATAACTAAATCGGATTGATAGATAAGCTTTGTACTTATTTATATCAGTTCGATTTTTTGATTGGTGTAAAAAATAATCATTGATGGTGGATAAAGCGACAACACAAATACAACATGATTGTGGCATTAGA  >  CP000730/917342‑917478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.