New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 920390	46 (0.710)	3 (0.050)	3/230	NT	5.9%	coding (39/135 nt)	USA300HOU_0880	hypothetical protein
	?	CP000730	= 920428	55 (0.950)					coding (1/135 nt)	USA300HOU_0880	hypothetical protein

GCAGCAAACATCGGCGACAAAGAGTTAATACATATGTGGAGTGGACAAAGCCCGCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/920237‑920390 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaatccacaaaaATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGGTCGATTATTTATATTGCATGATTTGATTAATTTGATTGATTATATTGGACATGATGGTGTTGGCGGGATGCGTTGTTGCTAGTCGC  <  CP000730/920428‑920290                                                                                                                                                                                                                                                                                                       GCACCAAACATCGGCGACAAAGAGTTAATACATATGTGGAGTGGACAAAGCTCGCGACTAGCAACAACGCACCCCGCCAACACCCTCATGTCCAATATAGTCAATCAAATTAACCAAATCATGCCATATAAATAATCGACC                                                                                                                                                          <  2:64548/141‑1   AGCAAACATCAGCGACAAAGAGTTAATACATATGTGGAGTGGACAAAGCCCGCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGC                                                                                                                                                        <  2:275258/141‑1     CAAACATCGGCGACAAAGAGTTAATACATATGTGGAGTGGACAAAGCCCGCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAA                                                                                                                                                      <  1:60764/141‑1       AACATCGGCGACAAAGAGTTAATACATATGTGGAGTGGACAAAGCCCGCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATC                                                                                                                                                    <  2:323786/141‑1       AACATCGGCGACAAAGAGTTAATACATATGTGGAGTGGACAAAGCCCGCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATC                                                                                                                                                    >  1:423382/1‑141         CATCGGCGACAAAGAGTTAATACATATGTGGAGTGGACAAAGCCCGCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCA                                                                                                                                                  <  1:557153/141‑1          ATCGGCGACAAAGAGTTAATACATATGTGGAGTGGACAAAGCCCGCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCAC                                                                                                                                                 <  1:485150/141‑1          ATCGGCGACAAAGAGTTAATACATATGTGGAGTGGACAAAGCCCGCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCAC                                                                                                                                                 >  1:310183/1‑141                                                      GCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTT                                                                                                     <  2:729334/141‑1                                                       CGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTT                                                                                                    <  1:123567/141‑1                                                                                                                    AAATCATGCAATATAAATAATCGACCGCAGTCCACAAAGATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGGTCGATTATTTATATTGCATGATTTGATTAATTTGATTGATTATATTGGA                                       <  2:572975/141‑1                                                                                                                                             CGCAATCCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGGTCGATTATTTATATTGCATGATTTGATTAATTTGATTGATTATATTGGACATGATGGTGTTGGCGGGATGCGTT              >  2:612295/1‑141                                                                                                                                                  TCCACAAAAATGGCAAGCACTATAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGGTCGATTATTTATATTGCATGATTTGATTAATTTGATTGATTATATTGGACATGATGGTGTTGGCGGGATGCGTTGTTGC         <  2:778885/141‑1                                                                                                                                                  TCCACAAAAATAGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGGTCGATTATTTATATTGCATGATTTGATTAATTTGATTGATTATATTGGACATGATGGTGTTGGCGGGATGCGTTGTTGC         <  2:695748/141‑1                                                                                                                                                   CCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGGTCGATTATTTATATTGCATGATTTGATTAATTTGATTGATTATATTGGACATGATGGTGTTGGCGGGATGCGTTGTTGCT        >  1:684708/1‑141                                                                                                                                                   CCACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGGTCGATTATTTATATTGCATGATTTGATTAATTTGATTGATTATATTGGACATGATGGTGTTGGCGGGATGCGTTGTTGCT        >  2:238171/1‑141                                                                                                                                                     ACAAAAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGGTCGATTATTTATATTGCATGATTTGATTAATTTGATTGATTATATTGGACATGATGGTGTTGGCGGGATGCGTTGTTGCTAG      <  2:730205/141‑1                                                                                                                                                         AAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGGTCGATTATTTATATTGCATGATTTGATTAATTTGATTGATTATATTGGACATGATGGTGTTGGCGGGATGCGTTGTTGCTAGTCGC  <  2:777511/141‑1                                                                                                                                                         AAATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGGTCGATTATTTATATTGCATGATTTGATTAATATGATTGATTATATTGGACATGATGGTGTTGGCGGGATGCGTTGTTGCTAGTCGC  >  1:624379/1‑141                                                                                                                                                                                                                                                                                                       GCAGCAAACATCGGCGACAAAGAGTTAATACATATGTGGAGTGGACAAAGCCCGCGACTAGCAACAACGCATCCCGCCAACACCATCATGTCCAATATAATCAATCAAATTAATCAAATCATGCAATATAAATAATCGACCGCAATCCACAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/920237‑920390 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaatccacaaaaATGGCAAGCACTAAAATAATGTTTGGGGGTGCTTGTGCTTTTGTGGATTGCGGTCGATTATTTATATTGCATGATTTGATTAATTTGATTGATTATATTGGACATGATGGTGTTGGCGGGATGCGTTGTTGCTAGTCGC  <  CP000730/920428‑920290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.