New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1526523 =	56 (0.860)	2 (0.030)	3/240	NT	3.8%	coding (1420/2694 nt)	dnaQ	DNA‑directed DNA polymerase III epsilon subunit
	?	CP000730	1526542 =	48 (0.790)					coding (1401/2694 nt)	dnaQ	DNA‑directed DNA polymerase III epsilon subunit
Rejected: Frequency below/above cutoff threshold.

AAATCATGCACATTTAATTCATTCTGATGTTGAAAATTCAATATATCAATTGTTTGATGATTGTATAGTGGATGAAGCACATCGCTTACCAGACTATGCCTTAAATCAAGTGACAAATGAGTTGAGTTATGCTGATATTAAATATCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1526671‑1526523 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatatcagcATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAGAATGAATTAAATGTGCATGATTTGTAATACCA  >  CP000730/1526542‑1526680                                                                                                                                                                                                                                                                                                  AAATCATGCACATTTAATTCATTCTGATGTTGAAAATTCAATATATCAATTGTTTGATGATTGTATAGTGGATGAAGCACATCGCTTACCAGACTATGCCTTAAATCAAGTGACAAATGAGTTGAGTTATGCTGATATTAA                                                                                                                                                     <  1:418816/141‑1    TCATGCACATTTAATTCATTCTGATGTTGAAAATTCAATATATCAATTGTTTGATGATTGTATAGTGGATGAAGCACATCGCTTACCAGACTATGCCTTAAATCAAGTGACAAATGAGTTGAGTTATGCTGATATTAAATA                                                                                                                                                  <  1:672682/141‑1     CATGCACATTTAATTCATTCTGATGTTGAAAATTCAATATATCAATTGTTTGATGATTGTATAGTGGATGAAGCACATCGCTTACCAGACTATGCCTTAAATCAAGTGACAAATGAGTTGAGTTATGCTGATATTTAATAT                                                                                                                                                 <  2:378054/141‑1     CATGCACATTTAATTCATTCTGATGTTGAAAATTCAATATATCAATTGTTTGATGATTGTATAGTGGATGAAGCACATCGCTTACCAGACTATGCCTTAAATCAAGTGACAAATGAGTTGAGTTATGCTGATATTAAATAT                                                                                                                                                 <  2:711890/141‑1         CACATTTAATTCATTCTGATGTTGAAAATTCAATATATCAATTGTTTGATGATTGTATAGTGGATGAAGCACATCGCTTACCAGACTATGCCTTAAATCAAGTGACAAATGAGTTGAGTTATGCTGATATTAAATATCAGC                                                                                                                                             >  1:745307/1‑141                                                     TTTGATGATTGTATAGTGGATGAAGCACATCGCTTACCAGACTATGCCTTAAATCAAGTGACAAATGAGTTGAGTTATGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTG                                                                                                    <  1:508413/138‑1                                                     TTTGATGATTGTATAGTGGATGAAGCACATCGCTTACCAGACTATGCCTTAAATCAAGTGACAAATGAGTTGAGTTATGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTG                                                                                                    >  2:508413/1‑138                                                                                                                                           TAAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAGAATGAATTAAATGTGCATGATTT           >  1:174604/1‑141                                                                                                                                             AATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAGAATGAATTAAATGTGCATGATTTGT         <  1:208159/141‑1                                                                                                                                                   AGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAGAATGAATTAAATGTGCATGATTTGTAATACC   <  1:663413/141‑1                                                                                                                                                    GCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAGAATGAATTAAATGTGCATGATTTGTAATACCA  >  2:377694/1‑141                                                                                                                                                                                                                                                                                                  AAATCATGCACATTTAATTCATTCTGATGTTGAAAATTCAATATATCAATTGTTTGATGATTGTATAGTGGATGAAGCACATCGCTTACCAGACTATGCCTTAAATCAAGTGACAAATGAGTTGAGTTATGCTGATATTAAATATCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1526671‑1526523 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatatcagcATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAGAATGAATTAAATGTGCATGATTTGTAATACCA  >  CP000730/1526542‑1526680

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.