New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1526523 =	56 (0.860)	2 (0.030)	3/240	NT	3.8%	coding (1420/2694 nt)	dnaQ	DNA‑directed DNA polymerase III epsilon subunit
	?	CP000730	1526542 =	48 (0.790)					coding (1401/2694 nt)	dnaQ	DNA‑directed DNA polymerase III epsilon subunit
Rejected: Frequency below/above cutoff threshold.

AGCCTTCAAGCCAAAAATATCAATTGGTGCAATATCTAATTTTTCCAAAATTCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAGAATGAATTAAATGTGCATGATTTGTAATACCAAT  >  CP000730/1526404‑1526682                                                                                                                                           |                                                                                                                                             aGCCTTCAAGCCAAAAATATCAATTGGTGCAATATCTAATTTTTCCAAAATTCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATa                                                                                                                                            >  1:748034/1‑141 (MQ=255)   ccTTCAAGCCAAAAATATCAATTGGTGCAATATCTAATTTTTCCAAAATTCGCTGC‑TTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATaact                                                                                                                                         >  1:267811/1‑141 (MQ=255)     ttCAAGCCAAAAATATCAATTGGTGCAATATCTAATTTTTCCAAAATTCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATaactc                                                                                                                                        >  1:344431/1‑141 (MQ=255)         aGCCAAAAATATCAATTGGTGCAATATCTAATTTTTCCAAAATTCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATaactcaact                                                                                                                                    >  2:669608/1‑141 (MQ=255)            cAAAAATATCAATTGGTGCAATATCTAATTTTTCCAAAATTCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCAt                                                                                                                                 >  1:53504/1‑141 (MQ=255)            cAAAAATATCAATTGGTGCAATATCTAATTTTTCCAAAATTCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCAt                                                                                                                                 <  1:411991/141‑1 (MQ=255)             aaaaaTATCAATTGGTGCAATATCTAATTTTTCCAAAATTCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCAtt                                                                                                                                >  1:345655/1‑141 (MQ=255)              aaaaTATCAATTGGTGCAATATCTAATTTTTCCAAAATTCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCAttt                                                                                                                               >  2:661434/1‑141 (MQ=255)                    tCAATTGGTGCAATATCTAATTTTTCCAAAATTCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACt                                                                                                                         <  1:154715/141‑1 (MQ=255)                    tCAATTGGTGCAATATCTAATTTTTCCAAAATTCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACt                                                                                                                         >  1:315514/1‑141 (MQ=255)                     cAATTGGTGCAATATCTAATTTTTCCAAAATTCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACtt                                                                                                                        >  2:382363/1‑141 (MQ=255)                      aaTTGGTGCAATATCTAATTTTTCCAAAATTCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTg                                                                                                                       <  1:701809/141‑1 (MQ=255)                         tGGTGCAATATCTAATTTTTCCAAAATTCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGAtt                                                                                                                    <  2:474201/141‑1 (MQ=255)                            tGCAATATCTAATTTTTCCAAAATTCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCGACTCATTTGTCACTTGATTTaa                                                                                                                 <  1:769713/141‑1 (MQ=255)                                atatCTAATTTTTCCATAATGCTCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGTCa                                                                                                             <  2:312987/141‑1 (MQ=255)                                atatCTAACTGGTCCAAAATGTGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCATCATAACTCAACTCATTTGTCACTTGATTTAAGGCa                                                                                                             <  2:313208/141‑1 (MQ=255)                                 tatCTAATTTTTCCAAAATTCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCAt                                                                                                            >  2:708414/1‑141 (MQ=255)                                       aTTTTTCCAAAATTCGCTGCTATTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTTTg                                                                                                      >  1:184548/1‑141 (MQ=255)                                          tttgatgattgtatagtggatgaagcacatcgcttaccagactatgccttaaatcaagtgacaaatgagttgagttatgctgatatttaatatcagcATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTg                                                                                                      <  1:508413‑M2/41‑1 (MQ=255)                                          tttgatgattgtatagtggatgaagcacatcgcttaccagactatgccttaaatcaagtgacaaatgagttgagttatgctgatatttaatatcagcATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTg                                                                                                      >  2:508413‑M2/98‑138 (MQ=255)                                           ttCCAAAATTCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTaa                                                                                                  >  2:145262/1‑141 (MQ=255)                                            tCCAAAATTCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTTTTTTTTTTTTTTACCAATCAAACCAAGCTGATATTTAATATTGGCATAACTCAACTCATTTGTCACTTTTTTTAAGGCATAGTCTGTTaat                                                                                                 >  2:136840/1‑140 (MQ=255)                                            tCCAAAATTCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAg                                                                                                 <  2:330854/141‑1 (MQ=255)                                              cAAAATTCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCg                                                                                               >  2:742400/1‑141 (MQ=255)                                                 aaTTCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGAtg                                                                                            <  2:638099/141‑1 (MQ=255)                                                   ttCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGAtgtg                                                                                          <  1:111464/141‑1 (MQ=255)                                                    tCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACTATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGc                                                                                         <  2:193190/141‑1 (MQ=255)                                                    tCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGc                                                                                         <  2:289133/141‑1 (MQ=255)                                                    tCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGc                                                                                         <  1:259093/141‑1 (MQ=255)                                                       ctgctTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCTTTTTCTTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTc                                                                                      >  2:91331/1‑141 (MQ=255)                                                       ctgctTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTc                                                                                      >  2:101490/1‑141 (MQ=255)                                                           ttttCCAGTTGATTAATTGCCTTTAATAATTTTTCATTTTCGTTTTTACCAATAAAACCATGCTGATATTTAATATCAGCATAATTTAACTCATTTGTCACTTTATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATcc                                                                                  <  2:502837/141‑1 (MQ=255)                                                               ccAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACta                                                                              >  2:166848/1‑141 (MQ=255)                                                                cAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACtat                                                                             >  1:661439/1‑141 (MQ=255)                                                                    tGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACaa                                                                         >  1:144532/1‑141 (MQ=255)                                                                      aTCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAatc                                                                       >  2:110066/1‑141 (MQ=255)                                                                          aTTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAAtcatca                                                                   <  2:289807/141‑1 (MQ=255)                                                                          aTTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAAtcatca                                                                   >  1:64714/1‑141 (MQ=255)                                                                           ttGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCaa                                                                  <  2:289385/141‑1 (MQ=255)                                                                               cagactatgccttaaatcaagtgacaaatgagttgagttatGCTGATATTAAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCaaa                                                                 >  2:508413‑M1/42‑138 (MQ=255)                                                                               cagactatgccttaaatcaagtgacaaatgagttgagttatGCTGATATTAAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCaaa                                                                 <  1:508413‑M1/97‑1 (MQ=255)                                                                                               ttttCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAAttt                                              <  1:751767/141‑1 (MQ=255)                                                                                                           ccAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAgaa                                  <  1:175438/141‑1 (MQ=255)                                                                                                            cAATCAAACCAAGCTGATATTTAATATCAGCATAAGTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAgaat                                 <  2:687235/141‑1 (MQ=255)                                                                                                             aaTCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAgaatg                                <  1:746141/141‑1 (MQ=255)                                                                                                             aaTCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAgaatg                                >  1:312332/1‑141 (MQ=255)                                                                                                              aTCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAgaatga                               >  2:339443/1‑141 (MQ=255)                                                                                                              aTCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAgaatga                               >  2:39998/1‑141 (MQ=255)                                                                                                                cAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAgaatgaat                             <  1:145262/141‑1 (MQ=255)                                                                                                                cAAACCAAGCTAATATTTAATATCAGCATAACTCAACTCATGTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAgaatgaat                             <  1:90329/141‑1 (MQ=255)                                                                                                                     cAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAGAATGAATTAAAt                        >  2:679300/1‑141 (MQ=255)                                                                                                                     cAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAGAATGAATTAAAt                        >  2:72713/1‑141 (MQ=255)                                                                                                                       aGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAGAATGAATTAAAtgt                      >  2:401114/1‑141 (MQ=255)                                                                                                                        GCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAGAATGAATTAAAtgtg                     >  1:745307‑M1/1‑141 (MQ=255)                                                                                                                            ATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAGAATGAATTAAATGTGCATg                 <  2:711890‑M1/141‑1 (MQ=255)                                                                                                                            ATATTAAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAGAATGAATTAAATGTGCATg                 <  2:378054‑M1/141‑1 (MQ=255)                                                                                                                             TATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAGAATGAATTAAATGTGCATGa                <  1:672682‑M1/141‑1 (MQ=255)                                                                                                                                taaatatcagcATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAGAATGAATTAAATGTGCATGAttt             >  1:174604‑M2/12‑141 (MQ=255)                                                                                                                                TTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAGAATGAATTAAATGTGCATGAttt             <  1:418816‑M1/141‑1 (MQ=255)                                                                                                                                  aatatcagcATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAGAATGAATTAAATGTGCATGATTTGt           <  1:208159‑M2/132‑1 (MQ=255)                                                                                                                                        agcATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAGAATGAATTAAATGTGCATGATTTGTAATAcc     <  1:663413‑M2/138‑1 (MQ=255)                                                                                                                                         gcATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAGAATGAATTAAATGTGCATGATTTGTAATACCa    >  2:377694‑M2/3‑141 (MQ=255)                                                                                                                                           aTAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATAAAACAATTGATATATTGAATTTTCAACATCAGAATGAATTAAATGTGCATGATTTGTAATACCAAt  >  1:115011/1‑141 (MQ=255)                                                                                                                                           |                                                                                                                                             AGCCTTCAAGCCAAAAATATCAATTGGTGCAATATCTAATTTTTCCAAAATTCGCTGCTTTTCCAGTTGATCAATTGCCTTTAACAATTTTTCATTTTCGTTTTTACCAATCAAACCAAGCTGATATTTAATATCAGCATAACTCAACTCATTTGTCACTTGATTTAAGGCATAGTCTGGTAAGCGATGTGCTTCATCCACTATACAATCATCAAACAATTGATATATTGAATTTTCAACATCAGAATGAATTAAATGTGCATGATTTGTAATACCAAT  >  CP000730/1526404‑1526682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.