New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1617429	63 (0.970)	4 (0.060)	4/248	NT	6.5%	intergenic (+24/+192)	yqkF/USA300HOU_1502	dehydrogenase/hypothetical protein
	?	CP000730	= 1617470	54 (0.860)					intergenic (+65/+151)	yqkF/USA300HOU_1502	dehydrogenase/hypothetical protein

GTAGCGTCGACCAATTAAAAGAAAATATTGAAAACTATCATACTAAAGTTAGTTTAGATCAGATTAAAACAGCAAGAGCTCGTGTAAAGGATTTGGAATATACCAATCATTTAGTGTAGAAGTCATTTTCAGTAATAAAAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1617287‑1617429 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacaACAGCAGTAAGGCATTTTTATAATGAAACGCCTCATGCTGCTGTTTTTATTACTGAAAATGACTTCTACACTAAATGATTGGTATATTCCAAATCCTTTACACGAGCTCTTGCTGTTTTAATCTGATCTAAACTAACTTT  <  CP000730/1617470‑1617331                                                                                                                                                                                                                                                                                             GTAGCGTCGACCAATTAAAAGAAAATATTGAAAACTATCATACTAAAGTTAGTTTAGATCAGATTAAAACAGCAAGAGCTCGTGTAAAGGATTTGGAATATACCAATCATTTAGTGTAGAAGTCATTTTCAGTAATAAAAA                                                                                                                                                >  2:564725/1‑141          ACCAATTAAAAGAAAATATTGAAAACTATCATACTAAAGTTAGTTTAGATCAGATTAAAACAGCAAGAGCTCGTGTAAAGGATTTGGAATATACCAATCATTTAGTGTAGAAGTCATTTTCAGTAATAAAAACAACAGCAG                                                                                                                                       >  1:354507/1‑141                                            TAAAGTTAGTTTAGATCAGATTAAAACAGCAAGAGCTCGTGTAAAGGATTTGGAATATACCAATCATTTAGTGTAGAAGTCATTTTCAGTAATAAAAACAACAGCAGTAAGGCATTTTTATAATGAAACGCCTCATGCTGC                                                                                                     <  2:392536/141‑1                                              AAGTTAGTTTAGATCAGATTAAAACAGCAAGAGCTCGTGTAAAGGATTTGGAATATACCAATCATTTAGTGTAGAAGTCATTTTCAGTAATAAAAACAACAGCAGTAAGGCATTTTTATAATGAAACGCCTCATGCTGCTG                                                                                                   <  1:582891/141‑1                                                GTTAGTTTAGATCAGATTAAAACAGCAAGAGCTCGTGTAAAGGATTTGGAATATACCAATCATTTAGTGTAGAAGTCATTTTCAGTAATAAAAACAACAGCAGTAAGGCATTTTTATAATGAAACGCCTCATGCTGCTGTT                                                                                                 <  2:354507/141‑1                                                                                                                                            AACAACAGCAGTAAGGCATTTTTATAATGAAACGCCTCATGCTGCTGTTTTTATTACTGAAAATGACTTCTACACTAAATGATTGGTATATTCCAAATCCTTTACACGAGCTCTTGCTGTTTTAATCTGATCTAAACTAAC     <  1:296983/141‑1                                                                                                                                               AACAGCAGTAAGGCATTTTTATAATGAAACGCCTCATGCTGCTGTTTTTATTACTGAAAATGACTTCTACACTAAATGATTGGTATATTCCAAATCCTTTACACGAGCTCTTGCTGTTTTAATCTGATCTAAACTAACTTT  >  2:143498/1‑141                                                                                                                                                                                                                                                                                             GTAGCGTCGACCAATTAAAAGAAAATATTGAAAACTATCATACTAAAGTTAGTTTAGATCAGATTAAAACAGCAAGAGCTCGTGTAAAGGATTTGGAATATACCAATCATTTAGTGTAGAAGTCATTTTCAGTAATAAAAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1617287‑1617429 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacaACAGCAGTAAGGCATTTTTATAATGAAACGCCTCATGCTGCTGTTTTTATTACTGAAAATGACTTCTACACTAAATGATTGGTATATTCCAAATCCTTTACACGAGCTCTTGCTGTTTTAATCTGATCTAAACTAACTTT  <  CP000730/1617470‑1617331

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.