New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1732970	53 (0.810)	4 (0.070)	4/234	NT	7.3%	intergenic (+156/+81)	yvbT/USA300HOU_1624	dehydrogenase/hypothetical protein
	?	CP000730	= 1733003	53 (0.900)					intergenic (+189/+48)	yvbT/USA300HOU_1624	dehydrogenase/hypothetical protein

ATAAATAAACTAAGTGAAAGTATGTATCCATAATATTAATAAAAATATACAGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1732819‑1732970 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaaagcgccccATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATAAATGATTGAACAATAAAGACATCTTTCATTCAAAATGCTGTTACTG  <  CP000730/1733003‑1732868                                                                                                                                                                                                                                                                                                  ATAAATAAACTAAGTGAAAGTATGTATCCATAATATTAATAAAAATATACAGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATAT                                                                                                                                                     <  2:351338/141‑1  TAAATAAACTAAGTGAAAGTATGTATCCATAATATTAATAAAAATATACAGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTCTTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATG                                                                                                                                                    <  1:57616/141‑1   AAATAAACTAAGTGAAAGTATGTATCCATAATATTAATAAAAATATACAGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGA                                                                                                                                                   <  2:138694/141‑1   AAATAAACTAAGTGAAAGTATGTATCCATAATATTAATAAAAATATACAGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGA                                                                                                                                                   <  2:773583/141‑1        AACTAAGTGAAAGTATGTATCCATAATATTAATAAAAATATACAGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCG                                                                                                                                              >  1:681972/1‑141                                       ATAAAAATATACAGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAA                                                                                                               <  1:776888/141‑1                                         AAAAATATACAGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCTTTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGT                                                                                                             <  1:312863/141‑1                                               ATACAGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGG                                                                                                       <  1:178922/141‑1                                                      AACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGAGGCGATT                                                                                                >  2:92665/1‑141                                                                                                                                             TGAAAGCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATAAATGATTGAACAATAAAGACATCTTTCATTCAAAATGCT         <  1:597100/141‑1                                                                                                                                                AAGCGCCCCATCAAATAAACACTTACACTGGTGAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTTCTAAAATAAATGATTGAACAATAAAGACATCTTTCATTCAAAATGCTGTT      <  1:92665/141‑1                                                                                                                                                  GCGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATAAATGATTGAACAATAAAGACATCTTTCATTCAAAATGCTGTTAC    <  2:499181/141‑1                                                                                                                                                   CGCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATAAATGATTGAACAATAAAGACATCTTTCATTCAAAATGCTGTTACT   >  2:353247/1‑141                                                                                                                                                    GCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATAAATGATTGAACAATAAAGACATCTTTCATTCAAAATGCTGTTACTG  <  1:325097/141‑1                                                                                                                                                    GCCCCATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATAAATGATTGAACAATAAAGACATCTTTCATTCAAAATGCTGTTACTG  <  1:10090/141‑1                                                                                                                                                                                                                                                                                                  ATAAATAAACTAAGTGAAAGTATGTATCCATAATATTAATAAAAATATACAGTAACAGCATTTTGAATGAAAGATGTCTTTATTGTTCAATCATTTATTTTAGTAATGATTCAAATTCACTTAAAATTCTAATGCAAATATGAAAGCGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP000730/1732819‑1732970 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaaagcgccccATCAAATAAACACTTACACAGTGTAAAGTTGAAGGGGCGCTTTCATATTTGCATTAGAATTTTAAGTGAATTTGAATCATTACTAAAATAAATGATTGAACAATAAAGACATCTTTCATTCAAAATGCTGTTACTG  <  CP000730/1733003‑1732868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.