New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1912459 =	41 (0.630)	3 (0.050)	3/222	NT	6.9%	intergenic (+1992/+91)	sigS/ytbE	camphor resistance protein/possible aldo/keto reductase
	?	CP000730	2319389 =	46 (0.820)					intergenic (+2042/+74)	rhbC/asp23	possible Iuc family aerobactin synthesis protein/alkaline shock protein 23

GACGCGAATTGATGGTTTAAATCAAGATAAGAGAATTGGACCTGATCCAAAAAAATTTGAAGGCTAGATTAAAATCGCTCAACTGATGAAAAGGTTAGATGAATTGTCAGGGCTTGGGACATTAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1912616‑1912459 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaagctgatttctatCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAATTTAATGTCCCAAGCCCTTTTTATCGAATAACTTATTGTAAACCTTGTCTTTCTTGGTTATTGTTTTCGTTATTTTTTTCGTGTTTTTGTTTCCACT  >  CP000730/2319389‑2319527                                                                                                                                                                                                                                                                                                           GACGCGAATTGATGGTTTAAATCAAGATAAGAGAATTGGACCTGATCCAAAAAAATTTGAAGGCTAGATTAAAATCGCTCAACTGATGAAAAGGTTAGATGAATTGTCAGGGCTTGGGACATTAAGTTCTTAGGCAATGTA                                                                                                                                                              >  1:755438/1‑141     CGAATTGATGGTTTAAATCAAGATAAGAGAATTGGACCTGATCCAAAAAAATTTGAAGGCTAGATTAAAATCGCTCAACTGATGAAAAGGTTAGATGAATTGTCAGGGCTTGGGACATTAAGTTCTTAGGCAATGTAAAAA                                                                                                                                                          <  1:136720/141‑1      GAATTGATGGTTTAAATCAAGATAAGAGAATTGGACCTGATCCAAAAAAATTTGAAGGCTAGATTAAAATCGCTCAACTGATGAAAAGGTTAGATGAATTGTCAGGGCTTGGGACATTAAGTTCTTAGGCAATGTAAAAAA                                                                                                                                                         >  1:319479/1‑141      GAATTGATGGTTTAAATCAAGATAAGAGAATTGGACCTGATCCAAAAAAATTTGAAGGCTAGATTAAAATCGCTCAACTGATGAAAAGGTTAGATGAATTGTCAGGGCTTGGGACATTAAGTTCTTAGGCAATGTAAAAAA                                                                                                                                                         <  2:259954/141‑1      GAATTGATGGTTTAAATCAAGATAAGAGAATTGGACCTGATCCAAAAAAATTTGAAGGCTAGATTAAAATCGCTCAACTGATGAAAAGGTTAGATGAATTGTCAGGGCTTGGGACATTAAGTTCTTAGGCAATGTAAAAAA                                                                                                                                                         <  1:685123/141‑1        ATTGATGGTTTAAATCAAGATAAGAGAATTGGACCTGATCCAAAAAAATTTGAAGGCTAGATTAAAATCGCTCAACTGATGAAAAGGTTAGATGAATTGTCAGGGCTTGGGACATTAAGTTCTTAGGCAATGTAAAAAAGC                                                                                                                                                       <  1:563927/141‑1         TTGATGGTTTAAATCAAGATAAGAGAATTGGACCTGATCCAAAAAAATTTGAAGGCTAGATTAAAATCGCTCAACTGATGAAAAGGTTAGATGAATTGTCAGGGCTTGGGACATTAAGTTCTTAGGCAATGTAAAAAAGCT                                                                                                                                                      <  2:310674/141‑1          TGATGGTTTAAATCAAGATAAGAGAATTGGACCTGATCCAAAAAAATTTGAAGGCTAGATTAAAATCGCTCAACTGATGAAAAGGTTAGATGAATTGTCAGGGCTTGGGACATTAAGTTCTTAGGCAATGTAAAAAAGCTG                                                                                                                                                     >  1:758351/1‑141           GATGGTTTAAATCAAGATAAGAGAATTGGACCTGATCCAAAAAAATTTGAAGGCTAGATTAAAATCGCTCAACTGATGAAAAGGTTAGATGAATTGTCAGGGCTTGGGACATTAAGTTCTTAGGCAATGTAAAAAAGCTGA                                                                                                                                                    <  1:251753/141‑1             TGGTTTAAATCAAGACAAGAGAATCAGACCTGATCCAAAAAAATTTGAAGGCTAGATTAAAATCGCTCAACTGATGAAAAGGTTAGATGAATTGTCAGGGCTTGGGACATTAAGTTCTTAGGCAATGTAAAAAAGCTGAgt                                                                                                                                                  >  2:626464/1‑139                 TTAAATCAAGATAAGAGAATTGGACCTGATCCAAAAAAATTTGAAGGCTAGATTAAAATCGCTCAACTGATGAAAAGGTTAGATGAATTGTCAGGGCTTGGGACATTAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTA                                                                                                                                              <  1:388892/141‑1                  TAAATCAAGATAAGAGAATTGGACATGATACAAAAAAATTTGAAGGCTAGATTAAAATCGCTCAACTGATGAAAAGGTTAGATGAATTGTCAGGGCTTGGGACATTAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTAT                                                                                                                                             <  2:36340/141‑1                               GAGAATTGGACCTGATCCAAAAAAATTTGAAGGCTAGATTAAAATCGCTCAACTGATGAAAAGGTTAGATGAATTGTCAGGGCTTGGGACATTAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATCAAATAATTAATA                                                                                                                                <  1:678959/141‑1                                                                                                                         ATTAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATCAAATAATTAA                                                                                                                                  <  1:274448/49‑1                                                                                                                         ATTAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTATCAAATAATTAA                                                                                                                                  >  2:274448/1‑49                                                                                                                                                AAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAATTTAATGTCCCAAGCCCTTTTTATCGAATAACTTATTGTAAACCTTGTCTTTCTTGGTTATTGTTTTCGTTATTTTTTTCGTGT               <  1:337652/141‑1                                                                                                                                                 AAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAATTTAATGTCCCAAGCCCTTTTTATCGAATAACTTATTGTAAACCTTGTCTTTCTTGGTTATTGTTTTCGTTATTTTTTTCGTGTT              >  1:635298/1‑141                                                                                                                                                   GCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAATTTAATGTCCCAAGCCCTTTTTATCGAATAACTTATTGTAAACCTTGTCTTTCTTGGTTATTGTTTTCGTTATTTTTTTCGTGTTTT            >  2:281425/1‑141                                                                                                                                                   GCTGATTTCTATCAAACAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAATTTAATGTCCCAAGCCCTTTTTATCGAATAACTTCTTGTAAACCTTGTCTTTCTTGGTTATTGTTTTCGTTATTTTTTTCGTGTTTT            <  2:109062/141‑1                                                                                                                                                       ATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAATTTAATGTCCCAAGCCCTTTTTATCGAATAACTTATTGTAAACCTTGTCTTTCTTGGTTATTGTTTTCGTTATTTTTTTCGTGTTTTTGTT        <  2:306232/141‑1                                                                                                                                                       ATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAATTTAATGTCCCAAGCCCTTTTTATCGAATAACTTATTGTAAACCTTGTCTTTCTTGGTTATTGTTTTCGTTATTTTTTTCGTGTTTTTGTT        >  2:365458/1‑141                                                                                                                                                        TTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAATTTAATGTCCCAAGCCCTTTTTATCGAATAACTTATTGTAAACCTTGTCTTTCTTGGTTATTGTTTTCGTTATTTTTTTCGTGTTTTTGTTT       >  2:251895/1‑141                                                                                                                                                            TATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAATTTAATGTCCCAAGCCCTTTTTATCGAATAACTTATTGTAAACCTTGTCTTTCTTGGTTATTGTTTTCGTTATTTTTTTCGTGTTTTTGTTTCCAC   <  1:165170/141‑1                                                                                                                                                            TATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAATTTAATGTCCCAAGCCCTTTTTATCGAATAACTTATTGTAAACCTTGTCTTTCTTGGTTATTGTTTTCGTTATTTTTTTCGTGTTTTTGTTTCCAC   <  2:38183/141‑1                                                                                                                                                            TATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAATTTAATGTCCCAAGCCCTTTTTATCGAATAACTTATTGTAAACCTTGTCTTTCTTGGTTATTGTTTTCGTTATTTTTTTCGTGTTTTTGTTTCCAC   <  2:476293/141‑1                                                                                                                                                             ATCAAATAATAAATAGAAATCAGCTTTTGTACATTGCCTAAGAATTTAATGTCCCAAGCCCTTTTTATCGAATAACTTATTGTAAACCTTGTCTTTCTTGGTTATAGTTTTCGTTATTTTTTTCGTGTTTTTGTTTCCACT  >  2:227259/1‑141                                                                                                                                                                                                                                                                                                           GACGCGAATTGATGGTTTAAATCAAGATAAGAGAATTGGACCTGATCCAAAAAAATTTGAAGGCTAGATTAAAATCGCTCAACTGATGAAAAGGTTAGATGAATTGTCAGGGCTTGGGACATTAAGTTCTTAGGCAATGTAAAAAAGCTGATTTCTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/1912616‑1912459 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaagctgatttctatCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAATTTAATGTCCCAAGCCCTTTTTATCGAATAACTTATTGTAAACCTTGTCTTTCTTGGTTATTGTTTTCGTTATTTTTTTCGTGTTTTTGTTTCCACT  >  CP000730/2319389‑2319527

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.