New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	1912459 =	41 (0.630)	3 (0.050)	3/222	NT	6.9%	intergenic (+1992/+91)	sigS/ytbE	camphor resistance protein/possible aldo/keto reductase
	?	CP000730	2319389 =	46 (0.820)					intergenic (+2042/+74)	rhbC/asp23	possible Iuc family aerobactin synthesis protein/alkaline shock protein 23

AACGTCAGTTCGAGGAATAAATAAAGTTAAACGAGAGCTAGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGAGCGATTTTAATCTAGCCTTCAAATTTTTTTGGATCAGGTCCAATTCTCTTATCTTGATTTA  >  CP000730/1912319‑1912599                                                                                                                                              |                                                                                                                                             aaCGTCAGTTCGAGGAATAAATAAAGTTAAACGAGAGCTAGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAAtaattaa                                                                                                                                              >  2:691369/1‑141 (MQ=32) aaCGTCAGTTCGAGGAATAAATAAAGTTAAACGAGAGCTAGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAAtaattaa                                                                                                                                              >  2:339642/1‑141 (MQ=32)  aCGTCAGTTCGAGGAATAAATAAAGTTAAACGAGAGCTAGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAAtaattaat                                                                                                                                             >  1:626464/1‑141 (MQ=31)  aCGTCAGTTCGAGGAATAAATAAAGTTAAACGAGAGCTAGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAAtaattaat                                                                                                                                             >  1:208820/1‑141 (MQ=31)   agtggaaacaaaaacacgaaaaaaataacgaaaactataaccaagaaagacaaggtttacaataagttattcgataaaaagggcttgggacattaaattcttaggcaatgtacaaaagctgatttctatttattatttgAt                                                                                                                                             >  2:227259‑M1/140‑141 (MQ=255)    gtggaaacaaaaacacgaaaaaaataacgaaaacaataaccaagaaagacaaggtttacaataagttattcgataaaaagggcttgggacattaaattcttaggcaatgtaaaaaagctgatttctattaattatttgATa                                                                                                                                            <  1:165170‑M1/3‑1 (MQ=255)    gtggaaacaaaaacacgaaaaaaataacgaaaacaataaccaagaaagacaaggtttacaataagttattcgataaaaagggcttgggacattaaattcttaggcaatgtaaaaaagctgatttctattaattatttgATa                                                                                                                                            <  2:38183‑M1/3‑1 (MQ=255)    gtggaaacaaaaacacgaaaaaaataacgaaaacaataaccaagaaagacaaggtttacaataagttattcgataaaaagggcttgggacattaaattcttaggcaatgtaaaaaagctgatttctattaattatttgATa                                                                                                                                            <  2:476293‑M1/3‑1 (MQ=255)        aaacaaaaacacgaaaaaaataacgaaaacaataaccaagaaagacaaggtttacaataagttattcgataaaaagggcttgggacattaaattcttaggcaatgtaaaaaagctgatttctattaattatttgATAGaaa                                                                                                                                        >  2:251895‑M1/135‑141 (MQ=255)         aacaaaaacacgaaaaaaataacgaaaacaataaccaagaaagacaaggtttacaataagttattcgataaaaagggcttgggacattaaattcttaggcaatgtaaaaaagctgatttctattaattatttgATAGAAAt                                                                                                                                       >  2:365458‑M1/134‑141 (MQ=255)         aacaaaaacacgaaaaaaataacgaaaacaataaccaagaaagacaaggtttacaataagttattcgataaaaagggcttgggacattaaattcttaggcaatgtaaaaaagctgatttctattaattatttgATAGAAAt                                                                                                                                       <  2:306232‑M1/8‑1 (MQ=255)             aaaacacgaaaaaaataacgaaaacaataaccaagaaagacaaggtttacaataagttattcgataaaaagggcttgggacattaaattcttaggcaatgtaaaaaagctgatttctattaattatttgATAGAAATCAGc                                                                                                                                   >  2:281425‑M1/130‑141 (MQ=255)             aaaacacgaaaaaaataacgaaaacaataaccaagaaagacaaggtttacaagaagttattcgataaaaagggcttgggacattaaattcttaggcaatgtaaaaaagctgatttctattaattgtttgATAGAAATCAGc                                                                                                                                   <  2:109062‑M1/12‑1 (MQ=255)               aacacgaaaaaaataacgaaaacaataaccaagaaagacaaggtttacaataagttattcgataaaaagggcttgggacattaaattcttaggcaatgtaaaaaagctgatttctattaattatttgATAGAAATCAGCtt                                                                                                                                 >  1:635298‑M1/128‑141 (MQ=255)                acacgaaaaaaataacgaaaacaataaccaagaaagacaaggtttacaataagttattcgataaaaagggcttgggacattaaattcttaggcaatgtaaaaaagctgatttctattaattatttgATAGAAATCAGCttt                                                                                                                                <  1:337652‑M1/15‑1 (MQ=255)                                 gagaACTAGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAAc                                                                                                              <  2:210061/141‑1 (MQ=11)                                      cTAGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAAt                                                                                                         >  1:606436/1‑141 (MQ=32)                                         ggTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTc                                                                                                      <  1:166180/141‑1 (MQ=32)                                               gTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAg                                                                                                 >  1:376807/1‑141 (MQ=17)                                                tATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGcc                                                                                               <  2:5479/141‑1 (MQ=32)                                                   tAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTg                                                                                            <  1:463818/141‑1 (MQ=32)                                                    aaTGGCACTTAATATAACTTAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGa                                                                                           <  1:633063/141‑1 (MQ=12)                                                        gCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATCGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAAt                                                                                       <  1:399663/141‑1 (MQ=21)                                                          aCTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTc                                                                                     >  2:777321/1‑141 (MQ=35)                                                           cTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCa                                                                                    <  2:64180/141‑1 (MQ=37)                                                           cTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCa                                                                                    >  1:772772/1‑141 (MQ=37)                                                             tAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATTATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATc                                                                                  >  2:551003/1‑141 (MQ=38)                                                               atatAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTa                                                                                <  2:329470/141‑1 (MQ=40)                                                                tataAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTaa                                                                               <  2:365878/141‑1 (MQ=40)                                                                   aaGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCt                                                                            <  1:713095/141‑1 (MQ=255)                                                                     ggAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCttt                                                                          <  2:323899/141‑1 (MQ=255)                                                                       aaaaTAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTtc                                                                        <  1:668181/141‑1 (MQ=255)                                                                        aaaTAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTtca                                                                       <  2:553266/141‑1 (MQ=255)                                                                          aTAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTtcatc                                                                     >  2:603185/1‑141 (MQ=255)                                                                           tAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTtcatca                                                                    <  1:624541/141‑1 (MQ=255)                                                                             gcagcTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATATCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGt                                                                  <  1:395994/141‑1 (MQ=255)                                                                               agcTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTAACAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTg                                                                >  2:131197/1‑141 (MQ=255)                                                                                       gAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGAGCGAttt                                                        <  2:201316/141‑1 (MQ=255)                                                                                             tACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGAGCGATTTTAATCt                                                  >  2:562254/1‑141 (MQ=255)                                                                                               cATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGAGCGATTTTAATCTAg                                                >  1:435234/1‑141 (MQ=255)                                                                                                   ataAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGAGCGATTTTAATCTAGCCtt                                            >  2:298923/1‑141 (MQ=255)                                                                                                     aaaaTACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGAGCGATTTTAATCTAGCCTTCa                                          <  1:773047/141‑1 (MQ=255)                                                                                                     aaaaTACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGAGCGATTTTAATCTAGCCTTCa                                          <  1:221372/141‑1 (MQ=255)                                                                                                     aaaaTACATATC‑AAAAAAGCTCATTTCTATCTAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGCGCGATTTTAATCTAGCCTTCa                                          <  2:584156/141‑1 (MQ=255)                                                                                                          aCATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCACTGACAATTCATCTAACCTTTTCATCAGTTGAGCGATTTTAATCTAGCCTTCAAAttt                                     >  1:38236/1‑141 (MQ=255)                                                                                                            atatC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGAGCGATTTTAATCTAGCCTTCAAAttttt                                   <  2:303051/141‑1 (MQ=255)                                                                                                                c‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGAGCGATTTTAATCTAGCCCTCAAATTTTTTTgg                               >  2:414227/1‑141 (MQ=255)                                                                                                                       aGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGAGCGATTTTAATCTAGCCTTCAAATTTTTTTGGATCAgg                         >  2:261378/1‑141 (MQ=255)                                                                                                                       aGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGAGCGATTTTAATCTAGCCTTCAAATTTTTTTGGATCAgg                         <  1:299771/141‑1 (MQ=255)                                                                                                                        gCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGAGCGATTTTAATCTAGCCTTCAAATTTTTTTGGCTCAGGt                        >  2:536855/1‑141 (MQ=255)                                                                                                                          tGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGAGCGATTTTAATCTAGCCTTCAAATTTTTTTGGATCAGGTcc                      <  2:725816/141‑1 (MQ=255)                                                                                                                            aTTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATATAACCTTTTCATCAGTTGAGCGATTTTAATCTCGCCTTCAAATTTTTTTGGATCCGGACCaa                    >  2:107527/1‑141 (MQ=255)                                                                                                                             tttCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGAGCGATTTTAATCTAGCCTTCAAATTTTTTTGGATCAGGTCCAAt                   <  2:97516/141‑1 (MQ=255)                                                                                                                                 tattaattatttgATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGAGCGATTTTAATCTAGCCTTCAAATTTTTTTGGATCAGGTCCAATtctc               <  1:678959‑M1/128‑1 (MQ=255)                                                                                                                                  aTCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGAGCGATTTTAATCTAGCCTTCAAATTTTTTTGGATCAGGTCCAATTctct              <  2:23710/141‑1 (MQ=255)                                                                                                                                   ttaattatttgATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAAt                                                                                                         >  2:274448‑M1/12‑49 (MQ=255)                                                                                                                                   ttaattatttgATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAAt                                                                                                         <  1:274448‑M1/38‑1 (MQ=255)                                                                                                                                     aaaTAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGAGCGATTTTAATCTAGCCTTCAAATTTTTTTGGATCAGGTCCAATTCTCTTAt           >  1:621112/1‑141 (MQ=255)                                                                                                                                       ataatTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGAGCGATTTTAATCTAGCCTTCAAATTTTTTTGGATCAGGTCCAATTCTCTTATCt         <  1:478845/141‑1 (MQ=255)                                                                                                                                          attaatAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGAGCGATTTTAATCTAGCCTTCAAATTTTTTTGGATCAGGTCCAATTCTCTTATCTTGa      >  2:724288/1‑141 (MQ=255)                                                                                                                                          attaagAGAAATCAGCTGTTTTACATTGCCTAAGATCTTAATGTCCCAAGCCCTGACGATTCTTCTAGCCTTTTCATCAGTTGAGCGATTTTCATCTAGCCTTCAAATTTCTTTGGATCTGGTCCAATGCTCTTATCTTGa      <  2:450299/141‑1 (MQ=255)                                                                                                                                           ttaatAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGAGCGATTTTAATCTAGCCTTCAAATTTTTTTGGATCAGGTCCAATTCTCTTATCTTGAt     <  2:237781/141‑1 (MQ=255)                                                                                                                                              ATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGAGCGATTTTAATCTAGCCTTCAAATTTTTTTGTATCATGTCCAATTCTCTTATCTTGATTTa  <  2:36340‑M1/141‑1 (MQ=255)                                                                                                                                              |                                                                                                                                             AACGTCAGTTCGAGGAATAAATAAAGTTAAACGAGAGCTAGGTTTTGTATTAATGGCACTTAATATAAGGAAAATAGCAGCTCAACGAGCTGTACATTATAAAATACATATC‑AAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTACATTGCCTAAGAACTTAATGTCCCAAGCCCTGACAATTCATCTAACCTTTTCATCAGTTGAGCGATTTTAATCTAGCCTTCAAATTTTTTTGGATCAGGTCCAATTCTCTTATCTTGATTTA  >  CP000730/1912319‑1912599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.