| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 1917812 | 48 (0.740) | 4 (0.070) | 4/236 | NT | 8.2% | intergenic (+28/+108) | pckA/pckA | phosphoenolpyruvate carboxykinase (ATP)/transposase |
| ? | CP000730 | = 1917816 | 46 (0.770) | intergenic (+32/+104) | pckA/pckA | phosphoenolpyruvate carboxykinase (ATP)/transposase | |||||
TGGAGCGACAAAGAGAAATATAAAGCACAAGCAGAAGATTTAATTCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAAGTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1917662‑1917812‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaccacccgt‑TCACACGGGTGGTTTTGATTTAGTATTCAAATTTATTTGTTGAAGCTACCTTTTTCAGCAATATGTTCAAC‑TTTTTCACCAAATTTTTCGAAGTTCTTTTCAAAACGTTGAATTAAATCTTCTGCTTGTGCTTTAT < CP000730/1917816‑1917681 TGGAGCGACAAAGAGAAATATAAAGCACAAGCAGAAGATTTAATTCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAAGTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAA > 1:15157/1‑141 ACAAAGAGAAATATAAAGCACAAGCAGAAGATTTAATTCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAAGTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACC > 1:55675/1‑141 AAAGAGAAATATAAAGCACAAGCAGAAGATTTAATTCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAAGTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCG < 2:278275/141‑1 GAGAAATATAAAGCACAAGCAGAAGATTTAATTCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAAGTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGT‑TC < 1:122113/141‑1 AATATAAAGCACAAGCAGAAGATTTAATTCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAAGTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGT‑TCACAC < 2:325739/141‑1 ATAAAGCACAAGCAGAAGATTTAATTCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAAGTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGT‑TCACACGGG < 2:551185/141‑1 acctggaAAAAATTTGATGAAGAACTTGAACATATTACTGAAAAAGGTAACTTCAAAAAATAAATTTGAATACTAAATCAAAACCACCCTT‑TCACTCAGTTGGTTTTGATTTAGTATTCAAATTTATTTGTTGAAGCTACC < 2:753119/134‑1 TGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGA‑ACGGGTGGTTTTGATTTAGTATTCAAATTTATTTGTTGAAGCTACCTTTTTCAGCAATATGTTCAAC‑TTTTT > 1:475919/1‑141 ACCACCCGT‑TCACACGGGTGGTTTTGATTTAGTATTCAAATTTATTTGTTGAAGCTACCTTTTTCAGCAATATGTTCAACTTTTTTCACCAAATTTTTCGAAGTTCTTTTCAAAACGATGAATTAAATCTTCTGCTTGTGC > 1:266840/1‑141 ACCCGT‑TCACACGGGTGGTTTTGATTTAGTATTCAAATTTATTTGTTGAAGCTACCTTTTTCAGCAATATGTTCAAC‑TTTTTCACCAAATTTTTCGAAGTTCTTTTCAAAACGTTGAATTAAATCTTCTGCTTGTGCTTTA < 2:535936/141‑1 CCCGT‑TCCCACGGGTGGTTTTGATTTAGTATTCAAATTTATTTGTTGAAGCTACCTTTTTCAGCAATATGTTCAAC‑TTTTTCACCAAATTTTTCGAAGTTCTTTTCAAAACGTTGAATTAAATCTTCTGCTTGTGCTTTAT > 1:622972/1‑141 CCCGT‑TCACACGGGTGGTTTTGATTTAGTATTCAAATTTATTTGTTGAAGCTACCTTTTTCAGCAATATGTTCAAC‑TTTTTCACCAAATTTTTCGAAGTTCTTTTCAAAACGTTGAATTAAATCTTCTGCTTGTGCTTTAT < 1:320313/141‑1 CCCGT‑TCACACGGGTGGTTTTGATTTAGTATTCAAATTTATTTGTTGAAGCTACCTTTTTCAGCAATATGTTCAAC‑TTTTTCACCAAATTTTTCGAAGTTCTTTTCAAAACGTTGAATTAAATCTTCTGCTTGTGCTTTAT > 2:685090/1‑141 CCCGT‑TCACACGGGTGGTTTTGATTTAGTATTCAAATTTATTTGTTGAAGCTACCTTTTTCAGCAATATGTTCAAC‑TTTTTCACCAAATTTTTCGAAGTTCTTTTCAAAACGTTGAATTAAATCTTCTGCTTGTGCTTTAT < 2:158059/141‑1 TGGAGCGACAAAGAGAAATATAAAGCACAAGCAGAAGATTTAATTCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAAGTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/1917662‑1917812‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaccacccgt‑TCACACGGGTGGTTTTGATTTAGTATTCAAATTTATTTGTTGAAGCTACCTTTTTCAGCAATATGTTCAAC‑TTTTTCACCAAATTTTTCGAAGTTCTTTTCAAAACGTTGAATTAAATCTTCTGCTTGTGCTTTAT < CP000730/1917816‑1917681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |