New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1917812	48 (0.740)	4 (0.070)	4/236	NT	8.2%	intergenic (+28/+108)	pckA/pckA	phosphoenolpyruvate carboxykinase (ATP)/transposase
	?	CP000730	= 1917816	46 (0.770)					intergenic (+32/+104)	pckA/pckA	phosphoenolpyruvate carboxykinase (ATP)/transposase

ATAAAGCACAAGCAGAAGATTTAATTCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTATTCCAGCAACCCTAAAGGGTTACTCTTTTTTCTTTCTTTTTTTATTTTTCTCTCC  >  CP000730/1917681‑1917955                                                                                                                                         |                                                                                                                                            ataAAGCACAAGCAGAAGATTTAATTCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAacggg                                                                                                                                        <  1:320313‑M2/141‑6 (MQ=255) ataAAGCACAAGCAGAAGATTTAATTCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAacggg                                                                                                                                        >  2:685090‑M2/1‑136 (MQ=255) ataAAGCACAAGCAGAAGATTTAATTCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAacggg                                                                                                                                        <  2:158059‑M2/141‑6 (MQ=255) ataAAGCACAAGCAGAAGATTTAATTCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGGGAacggg                                                                                                                                        >  1:622972‑M2/1‑136 (MQ=255)  taAAGCACAAGCAGAAGATTTAATTCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAacgggt                                                                                                                                       <  2:535936‑M2/141‑7 (MQ=255)      gCACAAGCAGAAGATTTAATTCATCGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAAAGTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAacgggtggt                                                                                                                                    >  1:266840‑M2/1‑132 (MQ=255)           aGCAGAAGATTTAATTCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTc                                                                                                                              >  1:629771/1‑141 (MQ=255)           aGCAGAAGATTTAATTCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTc                                                                                                                              >  1:585326/1‑141 (MQ=255)              agaagaTTTAATTCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGc                                                                                                                           <  1:731/141‑1 (MQ=255)                   aTTTAATTCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCta                                                                                                                      <  1:690015/141‑1 (MQ=255)                    tttAATTCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCtat                                                                                                                     <  2:88881/141‑1 (MQ=255)                    tttAATTCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCtat                                                                                                                     <  2:503482/141‑1 (MQ=255)                      tacttCAACGATTTGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTCGCACATATAGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATaa                                                                                                                   >  2:72572/4‑141 (MQ=38)                         ttCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGcc                                                                                                                <  2:256166/141‑1 (MQ=255)                         ttCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGcc                                                                                                                <  2:704734/141‑1 (MQ=255)                             aCGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGccttcc                                                                                                            >  2:499262/1‑141 (MQ=255)                                ttttGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTa                                                                                                         >  1:396228/1‑141 (MQ=255)                                 tttGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTAc                                                                                                        >  2:49930/1‑141 (MQ=255)                                 tttGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTAc                                                                                                        >  2:36938/1‑141 (MQ=255)                                 tttGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTAc                                                                                                        <  1:136927/141‑1 (MQ=255)                                  ttGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACt                                                                                                       >  1:547293/1‑141 (MQ=255)                                   tGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTg                                                                                                      <  1:331339/141‑1 (MQ=255)                                    gAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTgg                                                                                                     >  2:713313/1‑141 (MQ=255)                                        aGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAg                                                                                                 <  2:4039/141‑1 (MQ=255)                                            cTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCt                                                                                             <  1:552720/141‑1 (MQ=255)                                            cTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCt                                                                                             <  1:170454/141‑1 (MQ=255)                                               cGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTaaa                                                                                          >  2:87210/1‑141 (MQ=255)                                                   aaaTTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAggg                                                                                      <  1:180123/141‑1 (MQ=255)                                                   aaaTTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAggg                                                                                      <  2:157394/141‑1 (MQ=255)                                                   aaaTTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAACAAATTTTAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAggg                                                                                      <  1:783347/141‑1 (MQ=255)                                                     aTTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCa                                                                                    >  2:314690/1‑141 (MQ=255)                                                         ggTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGa                                                                                >  2:575243/1‑141 (MQ=255)                                                          gTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGAc                                                                               >  1:407205/1‑141 (MQ=255)                                                             aaaaa‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGT‑TCAcacgggtggttttgatttagtattcaaatttatttgttgaagctacctttttcagcaatatgttca                                                                           >  1:475919‑M2/1‑75 (MQ=255)                                                              aaaa‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGt                                                                           <  1:717774/141‑1 (MQ=255)                                                               aaa‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTc                                                                          <  1:134450/141‑1 (MQ=255)                                                                 a‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAg                                                                        <  2:615836/141‑1 (MQ=255)                                                                        aCATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACt                                                                  <  2:673970/141‑1 (MQ=255)                                                                          atatTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGc                                                                >  1:676558/1‑141 (MQ=255)                                                                           tatTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCa                                                               <  2:634580/141‑1 (MQ=255)                                                                           tatTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCa                                                               <  1:387860/141‑1 (MQ=255)                                                                           tatTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCa                                                               <  1:124/141‑1 (MQ=255)                                                                            atTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCac                                                              >  1:367735/1‑141 (MQ=255)                                                                            atTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCac                                                              >  1:367835/1‑141 (MQ=255)                                                                             ttGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCact                                                             <  1:424990/141‑1 (MQ=255)                                                                                   aaaaaGGTAGCTTCAACAAATTAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTAtt                                                       <  2:727358/141‑1 (MQ=255)                                                                                       aGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTATTCCAg                                                   >  1:145335/1‑141 (MQ=255)                                                                                        ggTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCAACTGAGTGAaagggtggttttgatttagtattcaaatttattttttgaagttacctttttcagtaatatgttcaagttcttcatcaaattttttccaggt                                                  <  2:753119‑M2/141‑92 (MQ=255)                                                                                            gCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTATTCCAGCAAcc                                              >  1:606935/1‑141 (MQ=255)                                                                                              ttCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTATTCCAGCAACCCt                                            <  2:585326/141‑1 (MQ=255)                                                                                                caacaaATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTATTCCAGCAACCCttt                                          <  1:629443/141‑3 (MQ=255)                                                                                                      ataaatTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTATTCCAGCAACCCTAAAGGGtt                                    >  2:5902/1‑141 (MQ=255)                                                                                                       taaatTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCCGCTAGAAGCCTTCCTCACCGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTATTCCCGCAACCCTAAAGGGTTa                                   >  1:549895/1‑141 (MQ=14)                                                                                                        aaatTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTATTCCAGCAACCCTAAAGGGTTAc                                  <  1:446101/141‑1 (MQ=40)                                                                                                         aatTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTATTCCAGCAACCCTAAAGGGTTAct                                 <  1:282552/141‑1 (MQ=39)                                                                                                           tttGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTATTCCAGCAACCCTAAAGGGTTActct                               >  1:253463/1‑141 (MQ=38)                                                                                                                                 cccGTGTGAacgggtggttttgatttagtattcaaatttatttgttgaagctacctttttcagcaatatgttcaactttttcaccaaatttttcgaagttcttttcaaaacgttgaattaaatcttctgcttgtgctttat         <  2:551185‑M2/141‑133 (MQ=255)                                                                                                                                    gtgtGAacgggtggttttgatttagtattcaaatttatttgttgaagctacctttttcagcaatatgttcaactttttcaccaaatttttcgaagttcttttcaaaacgttgaattaaatcttctgcttgtgctttatatt      <  2:325739‑M2/141‑136 (MQ=255)                                                                                                                                        gAacgggtggttttgatttagtattcaaatttatttgttgaagctacctttttcagcaatatgttcaactttttcaccaaatttttcgaagttcttttcaaaacgttgaattaaatcttctgcttgtgctttatatttctc  <  1:122113‑M2/141‑140 (MQ=255)                                                                                                                                         |                                                                                                                                            ATAAAGCACAAGCAGAAGATTTAATTCAACGTTTTGAAAAGAACTTCGAAAAATTTGGTGAAAAA‑GTTGAACATATTGCTGAAAAAGGTAGCTTCAACAAATAAATTTGAATACTAAATCAAAACCACCCGTGTGAACGGGTGGTTTGTTCTGCGGCTATAAGCCTTCCTTACTGGCCAGCCCTAAAAGGGCACTGACAAGTCAGCCAACTGCACTACTATTCCAGCAACCCTAAAGGGTTACTCTTTTTTCTTTCTTTTTTTATTTTTCTCTCC  >  CP000730/1917681‑1917955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.