| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | 2008942 = | 56 (0.860) | 4 (0.070) | 4/230 | NT | 7.8% | intergenic (+70/+121) | ygaE/ygaD | hypothetical membrane protein/ABC superfamily ATP binding cassette transporter, membrane protein |
| ? | CP000730 | 2008991 = | 45 (0.770) | intergenic (+119/+72) | ygaE/ygaD | hypothetical membrane protein/ABC superfamily ATP binding cassette transporter, membrane protein | |||||
TACGAGCATTTATATAGCATTCAAAACTTATAAAGTATTAGTTGTTTGACTTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGA‑GATTTTCTTAATT‑‑GAAAATAATCTTACTGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2009095‑2008942‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTATATAAATGCTCGTAAGCACCTTGTTTTGCAATCAATTCACGATGCGT > CP000730/2008991‑2009128 TACGAGCATTTATATAGCATTCAAAACTTTTAAAAGATTAGTTGTTTGACTTCAGTACAATCATGAAAAGAAAATTTGTAACAGTTTGGTGGGGACAAAAAATAGAAAAAGCAGTAAGA‑GATTTTCTTAATT‑‑GAAAATAAT < 2:446148/141‑1 AGCATTTATATAGCATTCAAAACTTATAAAGTATTAGTTGTTTGACTTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGA‑GATTTTCTTAATT‑‑GAAAATAATCTTA > 2:162973/1‑141 TTTATATAGCATTCAAAACTTATAAAGTATTAGTTGTTTGACTTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGA‑GATTTTCTTAATT‑‑GAAAATAATCTTACTGC < 1:105305/141‑1 TTATATAGCATTCAAAACTTATAAAGTATTAGTTGTTTGACTTCAGTACAATCTATACGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGA‑GATTTTCTTAATT‑‑GAAAATAATCTTACTGCT < 1:173258/141‑1 TATATAGCATTCAAAACTTATAAAGTATTAGTTGTTTGACTTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGA‑GATTTTCTTAATT‑‑GAAAATAATCTTACTGCTT < 2:10780/141‑1 ATAGCATTCAAAACTTATAAAGTATTAGTTGTTTGACTTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGA‑GATTTTCTTAATT‑‑GAAAATAATCTTACTGCTTTTT < 1:60765/141‑1 AGCATTCAAAACTTATAAAGTATTAGTTGTTTGACTTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGA‑GAAGTTCTTAATT‑‑GAAAATAACCTTACTGCTTTTgta > 2:445828/1‑138 TCAAAACTTATAAAGTATTAGTTTTTTGACTTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAAT‑CTCTTACTGCTTTTTCTATGTT < 1:269492/141‑1 AAAAAGCAGTAAGA‑GATTTTCTTAATT‑‑GAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTAT > 1:108736/1‑141 TAAGA‑GATTTTCTTAATT‑‑GAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTATATAAATGCT > 2:448557/1‑141 TTTTCTTAATT‑‑GAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTAAATAAATGCTCGTAAGC > 1:506207/1‑141 TACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTATATAAATGCTCGTAAGCACCTTGTTTTGCAATCAATTCA < 2:248072/141‑1 ACTGCTTTTTTTTTTTTTTTTCCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTATATATATTCTCTTAATCACCTTGTTTTGCAATCAATTCAC > 2:403580/1‑141 TTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTATATAAATGCTCGTAAGCACCTTGTTTTGCAATCAATTCACGATGC > 1:712697/1‑141 TTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTATATAAATGCTCGTAAGCACCTTGTTTTGCAATCAATTCACGATGCG < 2:118815/141‑1 TTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTATATAAATGCTCGTAAGCACCTTGTTTTGCAATCAATTCACGATGCGT < 1:499054/141‑1 TACGAGCATTTATATAGCATTCAAAACTTATAAAGTATTAGTTGTTTGACTTCAGTACAATCTTGAAGAGAAAATTTGTAACAGGATGGTGGGGTCATAACATAGAAAAAGCAGTAAGA‑GATTTTCTTAATT‑‑GAAAATAATCTTACTGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2009095‑2008942‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttactgctttttCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTATATAAATGCTCGTAAGCACCTTGTTTTGCAATCAATTCACGATGCGT > CP000730/2008991‑2009128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |