New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2008942 =	56 (0.860)	4 (0.070)	4/230	NT	7.8%	intergenic (+70/+121)	ygaE/ygaD	hypothetical membrane protein/ABC superfamily ATP binding cassette transporter, membrane protein
	?	CP000730	2008991 =	45 (0.770)					intergenic (+119/+72)	ygaE/ygaD	hypothetical membrane protein/ABC superfamily ATP binding cassette transporter, membrane protein

AATTAGCTTTTTCACATATCATAGATCTGATGCAGACATTGAAATTGTTGAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTAT  >  CP000730/2008803‑2009082                                                                                                                                            |                                                                                                                                                aaTTAGCTTTTTCACATATCATAGATCTGATGCAGACATTGAAATTGTTGAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTaaa                                                                                                                                                <  2:506939/141‑1 (MQ=255)  acgcatcgtgaattgattgcaaaacaaggtgcttacgagcatttatatagcattcaaaacttataaagtattagttgtttgacttcagtacaatcttgaagagaaaatttgtaacaggatggtggggtcataacatagaaa                                                                                                                                               <  1:499054‑M1/3‑1 (MQ=255)  aTTAGCTTTTTCACATATCATAGATCTGATGCAGACATTGAAATTGTTGAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTaaaa                                                                                                                                               >  1:35491/1‑141 (MQ=255)   cgcatcgtgaattgattgcaaaacaaggtgcttacgagcatttatatagcattcaaaacttataaagtattagttgtttgacttcagtacaatcttgaagagaaaatttgtaacaggatggtggggtcataacatagaaaa                                                                                                                                              <  2:118815‑M1/4‑1 (MQ=255)    gcatcgtgaattgattgcaaaacaaggtgcttacgagcatttatatagcattcaaaacttataaagtattagttgtttgacttcagtacaatcttgaagagaaaatttgtaacaggatggtggggtcataacatagaaaaa                                                                                                                                             >  1:712697‑M1/137‑141 (MQ=255)         gtgaattgattgcaaaacaaggtgattaagagaatatatatagcattcaaaacttataaagtattagttgtttgacttcagtacaatcttgaagagaaaatttgtaacaggatggtggggaaaaaaaaaaaAAAAAGCAGt                                                                                                                                        >  2:403580‑M1/132‑141 (MQ=255)          tgaattgattgcaaaacaaggtgcttacgagcatttatatagcattcaaaacttataaagtattagttgtttgacttcagtacaatcttgaagagaaaatttgtaacaggatggtggggtcataacatagAAAAAGCAGTa                                                                                                                                       <  2:248072‑M1/11‑1 (MQ=255)             cacaTATCATAGATCTGATGCAGACATTGAAATTGTTGAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGttaat                                                                                                                                    <  2:707133/141‑5 (MQ=255)             cacaTATCATAGATCTGATGCAGACATTGAAATTGTTGAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAACTAAATTTAAAAAAGCAGTAAGa                                                                                                                                    >  1:132668/1‑141 (MQ=255)               caTATCATAGATCTGATGCAGACATTGAAATTGTTGAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGatt                                                                                                                                  <  2:642836/141‑1 (MQ=255)               caTATCATAGATCTGATGCAGACATTGAAATTGTTGAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGatt                                                                                                                                  <  2:342956/141‑1 (MQ=255)                 tttttttgATCTGATGCAGACCTTGAAATTGTTGAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCCATTAATGCCACAATGAGATAACCTAATATTGAATCTCGAAATTAGATTTAAAAAAGCAGTAAGaatat                                                                                                                                >  2:67231/8‑141 (MQ=255)                 tatCCTAGATCTGATGCAGACATTGAAATTGTTGAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAAGTAAATTTAAAAAAGCAGTAAGattat                                                                                                                                >  2:480989/1‑141 (MQ=255)                  atCATAGATCTGATGCAGACATTGAAATTGTTGAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAAGCTCGAAATTAAATTTAAAAAAGCAGTAAGattatt                                                                                                                               <  1:685216/141‑1 (MQ=255)                       aGATCTGATGTAGACATTGAAATTGTTGAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATCAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑aa                                                                                                                        >  2:498963/1‑141 (MQ=255)                           cTGATGCAGACATTGAAATTGTTGAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACGAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTaa                                                                                                                    >  1:173360/1‑141 (MQ=255)                            tGATGCAGACATTGAAATTGTTGAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGCGCAAGACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAg                                                                                                                   >  1:213235/1‑141 (MQ=255)                            tGATGCAGACATTGAAATTGTTGAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGCAATAGGCGAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAg                                                                                                                   >  1:213336/1‑141 (MQ=255)                            tGATGCACACATTGAAATTGTTGAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAg                                                                                                                   >  1:621373/1‑141 (MQ=255)                              aTGCAGACATTGAAATTGTTGAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGaa                                                                                                                 >  2:411105/1‑141 (MQ=255)                               tGCAGACATTGAAATTGTTGAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCAAAAAAAAAAAAAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGaaa                                                                                                                <  2:395590/141‑1 (MQ=255)                                gcttacgagcatttatttagcattcaaaacttataaagtattagttgtttgacttcagtacaatcttgaagagaaaatttgtaacaggatggtggggtcataacatagAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGaaaa                                                                                                               >  1:506207‑M1/109‑141 (MQ=255)                                       agcatttatatagcattcaaaacttataaagtattagttgtttgacttcagtacaatcttgaagagaaaatttgtaacaggatggtggggtcataacatagAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTa                                                                                                       >  2:448557‑M1/102‑141 (MQ=255)                                        tGAAATTGTTGAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTAc                                                                                                      <  2:283571/141‑1 (MQ=255)                                           aaTTGTTGAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGc                                                                                                   <  1:660354/141‑1 (MQ=255)                                              tgttgAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGCTTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCttt                                                                                                <  1:408540/141‑1 (MQ=255)                                               gttgAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCtttt                                                                                               >  1:717513/1‑141 (MQ=255)                                                ttgAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCttttt                                                                                              <  2:618733/141‑1 (MQ=255)                                                atagcattcaaaacttataaagtattagttgtttgacttcagtacaatcttgaagagaaaatttgtaacaggatggtggggtcataacatagAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCttttt                                                                                              >  1:108736‑M1/93‑141 (MQ=255)                                                 tgAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTc                                                                                             >  1:10829/1‑141 (MQ=255)                                                  gaagaaGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCt                                                                                            >  2:770511/1‑141 (MQ=255)                                                   aagaagACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACCATGAGATCAACTAATCTTGAATCTCGAAATTAAATTTAAAAATGCAGTATGATTTTTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTGCTa                                                                                           <  2:466125/141‑1 (MQ=255)                                                     gaagaCTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATg                                                                                         >  1:255830/1‑141 (MQ=255)                                                       agaCTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAACAC‑TCTTACTGCTTTTTCTATGtt                                                                                       >  2:255574/1‑141 (MQ=255)                                                       agaCTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGtt                                                                                       >  2:170841/1‑141 (MQ=255)                                                              gATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGAccc                                                                                >  1:63661/1‑141 (MQ=255)                                                                 ttATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCccac                                                                             >  1:366993/1‑141 (MQ=255)                                                                    taACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCAt                                                                          >  2:486710/1‑141 (MQ=255)                                                                            aaaCAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTAc                                                                  >  1:20617/1‑141 (MQ=255)                                                                               cAATTTTATCAATTAATGCCAAAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAATAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACaaa                                                               <  2:545227/141‑1 (MQ=255)                                                                                   tttATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAAtttt                                                           >  1:652353/1‑141 (MQ=255)                                                                                   tttATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAAtttt                                                           >  1:652339/1‑141 (MQ=255)                                                                                     tATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTtct                                                         >  1:98236/1‑141 (MQ=255)                                                                                      atataatAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTTCACATTTtctc                                                        <  2:336074/135‑1 (MQ=255)                                                                                      aTCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTtctc                                                        >  1:748267/1‑141 (MQ=255)                                                                                         aaTTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTc                                                     <  2:366993/141‑1 (MQ=255)                                                                                            tAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAg                                                  <  2:255830/141‑1 (MQ=255)                                                                                              aTGCCACAATTAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGAt                                                <  1:422821/141‑1 (MQ=255)                                                                                              aTGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGAt                                                <  2:173678/141‑1 (MQ=255)                                                                                              aTGACAAAATGAGATAAACTAATAATGAATCTCGGATTTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTAAGTTATGACCCCACCATCCTGTTTCATATTTTCTCTTCTAGAt                                                <  2:662979/141‑1 (MQ=255)                                                                                                   acaATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTAc                                           >  2:759279/1‑141 (MQ=255)                                                                                                          gaTAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTc                                    >  2:61777/1‑141 (MQ=255)                                                                                                          gaTAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTc                                    >  2:736064/1‑141 (MQ=255)                                                                                                          gaTAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTc                                    >  1:540130/1‑141 (MQ=255)                                                                                                           aTAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCa                                   >  2:614891/1‑141 (MQ=255)                                                                                                             aaaCTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCaaa                                 <  1:582794/141‑1 (MQ=255)                                                                                                             aaaCTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATA‑TCTTACTGCTTTTTCTATGTTATGACCTCACCATCCTGTTACAAATTTTATCTTCAAGATTGTACTGAAGTaaaa                                 >  2:86093/1‑141 (MQ=255)                                                                                                                      ttGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATa                        >  1:118815/1‑141 (MQ=255)                                                                                                                      ttGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATCTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATa                        >  1:481573/1‑141 (MQ=255)                                                                                                                       tGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATAc                       >  1:544022/1‑141 (MQ=255)                                                                                                                          aTCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACttt                    <  2:192834/141‑1 (MQ=255)                                                                                                                                aaattaaattTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGt              <  2:652339/141‑1 (MQ=255)                                                                                                                                aaattaaattTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGt              <  2:652353/141‑1 (MQ=255)                                                                                                                                  attaaattTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGttt            <  1:228993/141‑1 (MQ=255)                                                                                                                                  attaaattTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGttt            <  1:237281/141‑1 (MQ=255)                                                                                                                                     aacatagAAAAAGCAGTAAGAG‑ATTTTCTTAATT‑‑GAAAATAATCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAAAAACTAATACTTTATAAGTTTTGa         <  1:269492‑M1/134‑1 (MQ=255)                                                                                                                                      aattTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGaa        >  1:59945/1‑141 (MQ=255)                                                                                                                                         ttAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGc     <  1:236020/141‑1 (MQ=255)                                                                                                                                            AAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCtat  <  1:60765‑M1/141‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                AATTAGCTTTTTCACATATCATAGATCTGATGCAGACATTGAAATTGTTGAAGAAGACTTTGATTTATAACATTAAAACAATTTTATCAATTAATGCCACAATGAGATAAACTAATATTGAATCTCGAAATTAAATTTAAAAAAGCAGTAAGATTATTTTC‑‑AATTAAGAAAATC‑TCTTACTGCTTTTTCTATGTTATGACCCCACCATCCTGTTACAAATTTTCTCTTCAAGATTGTACTGAAGTCAAACAACTAATACTTTATAAGTTTTGAATGCTAT  >  CP000730/2008803‑2009082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.