New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2248208 =	76 (1.170)	4 (0.060)	4/248	NT	5.2%	intergenic (+2/+128)	coaA/USA300HOU_2120	possible pantothenate kinase/hypothetical protein
	?	CP000730	2248263 =	74 (1.180)					intergenic (+57/+73)	coaA/USA300HOU_2120	possible pantothenate kinase/hypothetical protein

TGAACTTACATTTTAATTGAATTGAGTTGTAAGTAATTAAGTGATAATAAATGGAACAATACGTATTCAAAACACTTAGACCATAAAATAAAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2248351‑2248208 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCACGCCAGTTTTTAA  >  CP000730/2248263‑2248401                                                                                                                                                                                                                                                                                             TGAACTTACATTTTAATTGAATTGAGTTGTAAGTAATTAAGTGATAATAAATGGAACAATACGTATTCAAAACACTTAGACCATAAAATAAAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCT                                                                                                                                                <  1:349245/141‑1  GAACTTACATTTTAATTGAATTGAGTTGTAAGTAATTAAGTGATAATAAATGGAACAATACGTATTCAAAACACTTAGACCATAAAATAAAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTT                                                                                                                                               <  2:594136/141‑1                                                                                           AAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTT                                                      >  2:716088/1‑141                                                                                                  ATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGA                                               >  1:79972/1‑141                                                                                                    TTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTATATGGTCTAAGTGTTTTGAATACGTATTGTTCTATTTATTATCACTTAATTCCTTACAACTCAATTCAATTAAAATGTCAGTTCATGAGACA                                             >  2:780811/1‑141                                                                                                     TATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTATACAA                                            >  1:754014/1‑141                                                                                                                                       ATGGACTTATATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCACGCCA          <  1:101701/141‑1                                                                                                                                              TTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCACGCCAGTTTTTA   <  2:251184/141‑1                                                                                                                                               TTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCACGCCAGTTTTTAA  >  1:737942/1‑141                                                                                                                                                                                                                                                                                             TGAACTTACATTTTAATTGAATTGAGTTGTAAGTAATTAAGTGATAATAAATGGAACAATACGTATTCAAAACACTTAGACCATAAAATAAAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP000730/2248351‑2248208 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCATTAGACAATTTTTGCGCTGAAACAATTGTACCAACCACGCCAGTTTTTAA  >  CP000730/2248263‑2248401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.