New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP000730 | 2460721 = | 74 (1.130) | 3 (0.050) | 3/250 | NT | 4.0% | coding (554/900 nt) | natA | ABC superfamily ATP binding cassette transporter, ABC protein |
? | CP000730 | 2460749 = | 71 (1.120) | coding (526/900 nt) | natA | ABC superfamily ATP binding cassette transporter, ABC protein | |||||
Rejected: Frequency below/above cutoff threshold. |
AAAATTCAGCTGTTAGCAAGTATGTTACATAAACCAGAATTACTAATATTAGATGAGCCTTTCAGTGGTCTAGACCCAGTTAATGTTGAGTTATTAAAAGAAGCAGTTAAAGACTTAAATGATTGGGGCAGTACAATCGTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2460863‑2460721 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttaAGTCTTTAACTGCTTCTTTTAATAACTCAACATTAACTGGGTCTAGACCACTGAAAGGCTCATCTAATATTAGTAATTCTGGTTTATGTAACATACTTGCTAACAGCTGAATTTTTTGTTGATTCCCTTTTGATAGACTA > CP000730/2460749‑2460888 AAAATTCAGCTGTTAGCAAGTATGTTACATAAACCAGAATTACTAATATTAGATGAGCCTTTCAGTGGTCTAGACCCAGTTAATGTTGAGTTATTAAAAGAAGCAGTTAAAGACTTAAATGATTGGGGCAGTACAATCGTT < 1:751675/141‑1 TTAAAGACTTAAATGATTGGGGCAGTACAATCGTTTAAGTCTTTAACTGCTTCTTTTAATAACTCAACATTAACTGGGTCTAGACCACTGAAAGGCTCATCTAATATTAGTAATTC > 1:303103/1‑116 TTAAAGACTTAAATGATTGGGGCAGTACAATCGTTTAAGTCTTTAACTGCTTCTTTTAATAACTCAACATTAACTGGGTCTAGACCACTGAAAGGCTCATCTAATATTAGTAATTC < 2:303103/116‑1 TGATTGGGGCAGTACAATCGTTTAAGTCTTTAACTGCTTCTTTTAATAACTCAACATTAACTGGGGCTAGACCACTGAAAGGCTCATCTAATATTAGTATTTCTGGTTTATGTAACATACTTGCTAACAGCTGAATTTTTT > 2:286883/1‑141 TTAAGTCTTTAACTGCTTCTTTTAATAACTCAACATTAACTGGGTCTAGACCACTGAAAGGCTCATCTAATATTAGTAATTCTGGTTTATGTAACATACTTGCTAACAGCTGAATTTTTTGTTGATTCCCTTTTGATAGAC < 1:680929/141‑1 TTAAGTCTTTAACTGCTTCTTTTAATAACTCAACATTAACTGGGTCTAGACCACTGAAAGGCTCATCTAATATTAGTAATTCTGGTTTATGTAACATACTTGCTAACAGCTGAATTTTTTGTTGATTCCCTTTTGATAGAC < 1:348981/141‑1 AAGTCTTTAACTGCTTCTTTTAATAACTCAACATTAACTGGGTCTAGACCACTGAAAGGCTCATCTAATATTAGTAATTCTGGTTTATGTAACATACTTGCTAACAGCTGAATTTTTTGTTGATTCCCTTTTGATAGACTA < 1:463946/141‑1 AAGTCTTTAACTGCTTCTTTTAATAACTCAACATTAACTGGGTCTAGACCACTGAAAGGCTCATCTAATATTAGTAATTCTGGTTTATGTAACATACTTGCTAACAGCTGAATTTTTTGTTGATTCCCTTTTGATAGACTA < 2:657950/141‑1 AAAATTCAGCTGTTAGCAAGTATGTTACATAAACCAGAATTACTAATATTAGATGAGCCTTTCAGTGGTCTAGACCCAGTTAATGTTGAGTTATTAAAAGAAGCAGTTAAAGACTTAAATGATTGGGGCAGTACAATCGTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000730/2460863‑2460721 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttaAGTCTTTAACTGCTTCTTTTAATAACTCAACATTAACTGGGTCTAGACCACTGAAAGGCTCATCTAATATTAGTAATTCTGGTTTATGTAACATACTTGCTAACAGCTGAATTTTTTGTTGATTCCCTTTTGATAGACTA > CP000730/2460749‑2460888 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |