| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000730 | = 2588442 | 72 (1.100) | 3 (0.050) | 3/240 | NT | 4.4% | intergenic (+25/+143) | USA300HOU_2449/gltB2 | hypothetical protein/glutamate synthase (NADPH) |
| ? | CP000730 | = 2588473 | 63 (1.040) | intergenic (+56/+112) | USA300HOU_2449/gltB2 | hypothetical protein/glutamate synthase (NADPH) | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAATTAAATAAACGTCTTGGTGTTTCGACTAAAGAAAATAAAGATATTAGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2588298‑2588442‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctcagaATATGAATTAAGGTTTGTAACCTTAGTCTTATCTGAGGGCATTTTTAAGTTATAAACTATTTGTCGTCCATTTTATCTTTTTCTTTTAAACCTCTGTGCTTTAATTGCTTTTCAAGTTTTTCAAAACTAATATCTTTA < CP000730/2588473‑2588336 AAATTAAATAAACGTCTTGGTGTTTCGACTAAAGAAAATAAAGATATTAGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCC < 1:407807/139‑1AAATTAAATAAACGTCTTGGTGTTTCGACTAAAGAAAATAAAGATATTAGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCC > 2:407807/1‑139 TTAAATAAACGTCTTGGTGTTTCGACTAAAGAAAATAAAGATATTAGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAG > 2:683203/1‑141 TTAAATAAACGTCTTGGTGTTTCGACTAAAGAAAATAAAGATATTAGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAG > 1:506743/1‑141 TTAAATAAACGTCTTGGTGTTTCGACTAAAGAAAATAAAGATATTAGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAG > 1:506831/1‑141 TTAAATAAACGTCTTGGTGTTTCGACTAAAGAAAATAAAGATATTAGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAG > 2:683737/1‑141 TAAATAAACGTCTTGGTGTTTCGACTAAAGAAAATAAAGATATTAGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGA > 1:530109/1‑141 AAAAAAAGATATTAGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGAATATGAATTAAGGTTTGTAACCTTAGTCTTA < 2:393285/141‑1 GAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGAATATGAATTAAGGTTTGTAACCTTAGTCTTATCTGAG > 1:650692/1‑119 GAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGAATATGAATTAAGGTTTGTAACCTTAGTCTTATCTGAG < 2:650692/119‑1 GCCCTCAGAATATGAATTAAGGTTTGTAACCTTAGTCTTATCTGAGGGCATTTTTAAGTTATAAACTATTTGTCGTCCATTTTATCTTTTTCTTTTAAACCTCTGTGCTTTAATTGCTTTTCAAGTTTTTCAAAACTAATA > 1:355860/1‑141 CCTCAGAATATGAATTAAGGTTTGTAACCTTAGTCTTATCTGAGGGCATTTTTAAGTTATAAACTATTTGTCGTCCATTTTATCTTTTTCTTTTAAATTTATGTGCTTTAATTGCTTTTCAAGTTTTTTAAAATTAATATt > 2:744919/1‑140 AGAATATGAATTAAGGTTTGTAACCTTAGTCTTATCTGAGGGCATTTTTAAGTTATAAACTATTTGTCGTCCATTTTATCTTTTTCTTTTAAACCTCTGTGCTTTAATTGCTTTTCAAGTTTTTCAAAACTAATATCTTTA < 2:376844/141‑1 AAATTAAATAAACGTCTTGGTGTTTCGACTAAAGAAAATAAAGATATTAGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP000730/2588298‑2588442‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctcagaATATGAATTAAGGTTTGTAACCTTAGTCTTATCTGAGGGCATTTTTAAGTTATAAACTATTTGTCGTCCATTTTATCTTTTTCTTTTAAACCTCTGTGCTTTAATTGCTTTTCAAGTTTTTCAAAACTAATATCTTTA < CP000730/2588473‑2588336 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |