New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2588442	72 (1.100)	3 (0.050)	3/240	NT	4.4%	intergenic (+25/+143)	USA300HOU_2449/gltB2	hypothetical protein/glutamate synthase (NADPH)
	?	CP000730	= 2588473	63 (1.040)					intergenic (+56/+112)	USA300HOU_2449/gltB2	hypothetical protein/glutamate synthase (NADPH)
Rejected: Frequency below/above cutoff threshold.

AAATAAAGATATTAGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGAAATAATTAAGTTAACTAATGAGTTTTAATTTATAATCAT  >  CP000730/2588333‑2588613                                                                                                                                             |                                                                                                                                             aaaTAAAGATATTAGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCatat                                                                                                                                              >  1:267411/1‑141 (MQ=255) aaaTAAAGATATTAGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCatat                                                                                                                                              >  2:220287/1‑141 (MQ=255)    tAAAGATATTAGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATtct                                                                                                                                           <  2:376844‑M2/141‑4 (MQ=255)        aatattAATTTTAAAAAACTTGAAAAGCAATTAAAGCACATAAATTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATtctgagg                                                                                                                                       >  2:744919‑M2/2‑134 (MQ=255)          tatTAGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATtctgagggc                                                                                                                                     >  1:355860‑M2/1‑132 (MQ=255)           atTAGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCt                                                                                                                                    <  1:492571/141‑1 (MQ=255)           atTAGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCt                                                                                                                                    <  1:140965/141‑1 (MQ=255)              aGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTa                                                                                                                                 >  1:267410/1‑141 (MQ=255)              aGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTa                                                                                                                                 <  2:158867/141‑1 (MQ=255)              aGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTa                                                                                                                                 <  1:147071/141‑1 (MQ=255)                ttttGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAat                                                                                                                               >  2:182708/1‑141 (MQ=255)                 tttGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAata                                                                                                                              >  1:323368/1‑141 (MQ=255)                    gAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATAttt                                                                                                                           >  2:137463/1‑141 (MQ=255)                    gAAAAACATGAAAAGCAATTAAAGCACAGAGTTTTAAAAGAAAAATATAAAATGGACGACAAATAGTTTATAACTTAATAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATAttt                                                                                                                           <  2:377657/141‑1 (MQ=255)                      agaaCTGGAAAAGCAGTTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTCAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGa                                                                                                                         <  1:112380/139‑1 (MQ=255)                      aaaaCTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATGGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGa                                                                                                                         <  1:112401/141‑1 (MQ=255)                         aCTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGt                                                                                                                      >  2:484292/1‑141 (MQ=255)                           ttGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTc                                                                                                                    <  2:227/141‑1 (MQ=255)                            tGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGTTTACAAACCTTAATTCTTATTCTGAGGGCTTTAATATTTGAAATTCt                                                                                                                   >  2:267236/1‑141 (MQ=255)                            tGAAAAGCAATTAAAGCACAGAGAAAAAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCt                                                                                                                   <  2:55773/141‑1 (MQ=255)                               aaaGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTtgt                                                                                                                >  2:354396/1‑141 (MQ=255)                                   cAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGa                                                                                                            <  1:81885/141‑1 (MQ=255)                                    aaTTAAAGCATAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGAc                                                                                                           <  2:678330/141‑1 (MQ=255)                                       tAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAg                                                                                                        <  1:444692/141‑1 (MQ=255)                                        aaaGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTATGAGGGCTTTACTATTTGAAGTTCTTGTGTGACCAGc                                                                                                       >  1:22576/1‑141 (MQ=255)                                         aaGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCa                                                                                                      >  1:310061/1‑141 (MQ=255)                                              caGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCac                                                                                                 >  1:260328/1‑141 (MQ=255)                                                  ggTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCactact                                                                                             <  2:512436/141‑1 (MQ=255)                                                    tttAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTaa                                                                                           >  1:311453/1‑141 (MQ=255)                                                      tAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAata                                                                                         >  1:215796/1‑141 (MQ=255)                                                         aagaaaaagaTAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATaa                                                                                      <  2:303824/141‑1 (MQ=255)                                                             aaaagaTAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAatt                                                                                  >  1:506215/1‑141 (MQ=255)                                                               aagaTAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGAATAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAattat                                                                                >  1:593988/1‑141 (MQ=255)                                                                agaTAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTATGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAattatt                                                                               <  2:178909/141‑1 (MQ=255)                                                                agaTAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAattatt                                                                               <  1:131919/141‑1 (MQ=255)                                                                    aaaaTGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATACAATTATTTGCa                                                                           >  1:121941/1‑141 (MQ=255)                                                                     aaaTGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAg                                                                          >  2:775742/1‑141 (MQ=255)                                                                                    aGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCg                                                           >  2:510641/1‑141 (MQ=255)                                                                                         ataACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCgctgct                                                      <  2:199589/141‑1 (MQ=255)                                                                                         ataACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCgctgct                                                      <  2:199594/141‑1 (MQ=255)                                                                                         ataACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCgctgct                                                      >  2:728717/1‑141 (MQ=255)                                                                                         ataACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCgctgct                                                      >  1:368817/1‑141 (MQ=255)                                                                                         ataACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATCATTTGCAGTAACGCTAAAATCCgctgct                                                      >  2:570755/1‑141 (MQ=255)                                                                                           aaCTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCttt                                                    >  1:418711/1‑141 (MQ=255)                                                                                           aaCTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCttt                                                    <  2:156439/141‑1 (MQ=255)                                                                                             cTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCa                                                  >  1:163877/1‑141 (MQ=255)                                                                                              ttAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCaa                                                 >  1:753872/1‑141 (MQ=255)                                                                                               tAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAAt                                                >  2:102936/1‑141 (MQ=255)                                                                                                   aaTGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTcc                                            >  1:588072/1‑141 (MQ=255)                                                                                                   aaTGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTcc                                            <  1:70488/141‑1 (MQ=255)                                                                                                   aaTGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGATTTACTATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTcc                                            >  1:410892/1‑141 (MQ=255)                                                                                                     tGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCg                                          >  1:125389/1‑141 (MQ=255)                                                                                                      gCCCTCAGATAAGGCTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGa                                         <  2:368437/141‑1 (MQ=255)                                                                                                      gCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGa                                         <  2:506831/141‑1 (MQ=255)                                                                                                      gCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGa                                         <  2:506743/141‑1 (MQ=255)                                                                                                      gCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGa                                         <  1:279838/141‑1 (MQ=255)                                                                                                      gCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGa                                         >  1:492774/1‑141 (MQ=255)                                                                                                        ccTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGaaa                                       <  2:267410/141‑1 (MQ=255)                                                                                                         cTCAGATAAGACTAAGGTTACAAACCTTAATTCATATtctgagggcatttttaagttataaactatttgtcgtccattttatctttttcttttaaacctctgtgctttaattgcttttc                                                            <  2:650692‑M2/119‑83 (MQ=255)                                                                                                         cTCAGATAAGACTAAGGTTACAAACCTTAATTCATATtctgagggcatttttaagttataaactatttgtcgtccattttatctttttcttttaaacctctgtgctttaattgcttttc                                                            >  1:650692‑M2/1‑37 (MQ=255)                                                                                                           cAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGAaataa                                    <  1:212148/141‑1 (MQ=255)                                                                                                               tAAGACTAAGGTTACAAACCTTAATTCATATtctgagggcatttttaagttataaactatttgtcgtccattttatctttttcttttaaacctctgtgctttaattgcttttcaagtttttcaaaactaatatcttttttt                                <  2:393285‑M2/141‑111 (MQ=255)                                                                                                                aaGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGAAATAATTAAg                               <  1:74285/141‑1 (MQ=255)                                                                                                                 aGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGAAATAATTAAGt                              >  1:711279/1‑141 (MQ=255)                                                                                                                 aGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGAAATAATTAAGt                              >  2:295674/1‑141 (MQ=255)                                                                                                                   aCTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGAAATAATTAAGTTa                            >  2:633617/1‑141 (MQ=255)                                                                                                                   aCTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGAAATAATTAAGTTa                            >  1:153460/1‑141 (MQ=255)                                                                                                                   aCTAAAGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGAAATAANTAAGTTa                            >  2:590403/1‑141 (MQ=255)                                                                                                                            aCAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGAAATAATTAAGTTAACTAATGAg                   <  1:678585/141‑1 (MQ=255)                                                                                                                            aCAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGAAATAATTAAGTTAACTAATGAg                   <  1:608283/141‑1 (MQ=255)                                                                                                                             cAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGAAATAATTAAGTTAACTAATGAGt                  <  1:775742/141‑1 (MQ=255)                                                                                                                             cAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGAAATAATTAAGTTAACTAATGAGt                  <  2:225947/141‑1 (MQ=255)                                                                                                                                 ccTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGAAATAATTAAGTTAACTAATGAGTTTTa              <  2:174517/141‑1 (MQ=255)                                                                                                                                  cTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGAAATAATTAAGTTAACTAATGAGTTTTaa             <  2:187469/141‑1 (MQ=255)                                                                                                                                     aaTTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGAAATAATTAAGTTAACTAATGAGTTTTAAttt          <  1:142603/141‑1 (MQ=255)                                                                                                                                       ttCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGAAATAATTAAGTTAACTAATGAGTTTTAATTtat        >  1:193885/1‑141 (MQ=255)                                                                                                                                         cATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGAAATAATTAAGTTAACTAATGAGTTTTAATTTATaa      <  1:143230/141‑1 (MQ=255)                                                                                                                                          atatTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGAAATAATTAAGTTAACTAATGAGTTTTAATTTATAAt     >  2:385929/1‑141 (MQ=255)                                                                                                                                           tatTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGAAATAATTAAGTTAACTAATGAGTTTTAATTTATAATc    >  1:453463/1‑141 (MQ=255)                                                                                                                                             ttCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGAAATAATTAAGTTAACTAATGAGTTTTAATTTATAATCAt  <  2:418711/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                             AAATAAAGATATTAGTTTTGAAAAACTTGAAAAGCAATTAAAGCACAGAGGTTTAAAAGAAAAAGATAAAATGGACGACAAATAGTTTATAACTTAAAAATGCCCTCAGATAAGACTAAGGTTACAAACCTTAATTCATATTCTGAGGGCTTTAATATTTGAAGTTCTTGTGTGACCAGCATCCACTACTAATATAAAATTATTTGCAGTAACGCTAAAATCCGCTGCTTTCAATTTCCCGAAATAATTAAGTTAACTAATGAGTTTTAATTTATAATCAT  >  CP000730/2588333‑2588613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.