New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 52489 =64 (0.980)22 (0.380) 3/228 NT 24.9% intergenic (+99/‑574) USA300HOU_0043/USA300HOU_0044 hypothetical membrane protein/possible transcriptional regulator
?CP000730 = 52983 76 (1.320)intergenic (+593/‑80) USA300HOU_0043/USA300HOU_0044 hypothetical membrane protein/possible transcriptional regulator

Only 100 of 119 total aligned reads displayed.

GTATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTT  >  CP000730/52349‑52629
                                                                                                                                            |                                                                                                                                            
gTATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGa                                                                                                                                              <  1:631807/141‑1 (MQ=255)
  gtttgaaatcatcgtagtaatcgcgcgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcgcgtgaaataatcagagggatggtttgaaataatcgtagtaatcgcgcgaaaa                                                                                                                                            <  2:70058‑M1/3‑1 (MQ=255)
  aTCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGaaa                                                                                                                                            >  2:77482/1‑141 (MQ=255)
   tCGTTCTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTCCACTGAAACTATTTATAGATATAATTAAAATTAGTTAATATTACGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTNTGGGAAt                                                                                                                                           >  2:591345/1‑141 (MQ=255)
    ttgaaatcatcgtagtaatcgcgcgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatagctcgaaaatcgcgtgaaataatcagaggaattgattgaaaacatcgaagtaatagggcgaAAata                                                                                                                                          <  2:366488‑M1/5‑2 (MQ=255)
    cGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATc                                                                                                                                          <  2:636413/141‑1 (MQ=255)
      gaaatcatcgtagtaatcgcgcgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcgcgtgaaataatcagaggaatggtttgaaatcatcatagtaatcgcgataACATcgc                                                                                                                                        <  2:582832‑M1/7‑1 (MQ=255)
       aaatcatcgtagtaatcgcgcgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcgcgtgaaataataagagggatggtttgagaacatcgaagtaatcgctcgaAAATcgcg                                                                                                                                       <  2:758498‑M1/8‑1 (MQ=255)
        attttttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATATGAAAAATGTTGTGGAAATCGCGt                                                                                                                                      >  1:744656/2‑141 (MQ=255)
         ttttttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTg                                                                                                                                     <  2:43635/141‑1 (MQ=255)
         ttttttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTg                                                                                                                                     <  2:730471/141‑1 (MQ=255)
          tttttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGa                                                                                                                                    >  1:568985/1‑141 (MQ=255)
          tttttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGa                                                                                                                                    >  1:199956/1‑141 (MQ=255)
          tcatcgtagtaatcgcgcgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaAAATCGCGTGa                                                                                                                                    >  1:54314‑M1/131‑141 (MQ=255)
           ttttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGaa                                                                                                                                   >  2:322748/1‑141 (MQ=255)
            tttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGaaa                                                                                                                                  >  1:373653/1‑141 (MQ=255)
              tAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAaata                                                                                                                                <  2:689070/141‑1 (MQ=255)
                tagtaatcgcgcgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcgcgtgaaagaaacagaggtatacatcgaaataatcgttgtcatcgcacgaAAATCGcgagaaaaaaa                                                                                                                              <  2:318344‑M1/17‑5 (MQ=255)
                       aGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGa                                                                                                                       >  1:762225/1‑141 (MQ=255)
                           gCCTTAAAGAAATAGTTTTTCCCTGAAAATATTTATAGATATAATTAAAATTAATTAATATTCAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCg                                                                                                                   <  1:196369/141‑1 (MQ=255)
                           gCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCg                                                                                                                   <  2:52359/141‑1 (MQ=255)
                              ttAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGttt                                                                                                                <  2:361291/141‑1 (MQ=255)
                                 aaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaa                                                                                                             >  1:392266/1‑141 (MQ=255)
                                 aaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaa                                                                                                             <  1:522953/141‑1 (MQ=255)
                                  aGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaaa                                                                                                            >  2:225708/1‑141 (MQ=255)
                                     gtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaAAATCGCGTGAAATAATCAGAGGAATGGTTTGAAatca                                                                                                         <  2:100513‑M1/38‑1 (MQ=255)
                                     gtgaaataatcagaggaatcgtttgaaatcagcgtagtaatcgcgcgacaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcaaAAATCGCGTGAAATAATCAGAGGGATCGATTGAGatca                                                                                                         <  2:468102‑M1/38‑1 (MQ=255)
                                      aTAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAatcat                                                                                                        >  2:593620/1‑141 (MQ=255)
                                       tAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAatcatc                                                                                                       >  2:78176/1‑141 (MQ=255)
                                       gaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAatcatc                                                                                                       <  2:168406‑M1/40‑1 (MQ=255)
                                         gTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgt                                                                                                     <  1:694123/141‑1 (MQ=255)
                                          ataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaAAATCGCGTGAAATAATAAGAGGGATCGTTTGAGAACAtcgat                                                                                                    <  1:132903‑M1/43‑3 (MQ=255)
                                            tttCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaggcaaacatgta                                                                                                  <  2:373653/141‑13 (MQ=255)
                                             atcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaAAATCGCGTGAAATAATAAgagcgatggtttgagaaaataatagta                                                                                                 <  2:543755‑M1/46‑14 (MQ=255)
                                              tCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTaa                                                                                                <  1:369035/141‑1 (MQ=255)
                                               cagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAAt                                                                                               <  1:644975‑M1/48‑1 (MQ=255)
                                                    aaaaTATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGC                                                                                          <  2:518037‑M1/141‑1 (MQ=255)
                                                     aatcgtttgaaatcatcgtagtaatcgcgcgaaaatcgcgtgaaatactcagagagatcgtttgaaatcatcgtagtaatagcgcgaAAATCGCGTGAAATAATAAGAGGAATCGTTTGAAAACATAGtagtaatagagcg                                                                                         <  2:192173‑M1/54‑7 (MQ=255)
                                                     aatcgtttgaaatcatcgtagtaatcgcgcgaaaatcgcgtgaaataattagaggaatcgtttgaaatcatcgaaggaatcgcgcgaAAATAGCGTGAAATAATCAGAGGGATGGTTTGAGATCGTCGTAGTAattgcgag                                                                                         <  2:696618‑M1/54‑3 (MQ=255)
                                                       tcgtttgaaatcatcgtagtaatcgcgcgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaAAATCGCGTGAAATAATCAGAGGGATCGGTTGAGATCATcgtaggaatagagtgaa                                                                                       <  2:473189‑M1/56‑9 (MQ=255)
                                                       atatTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaa                                                                                       <  1:695371/141‑1 (MQ=255)
                                                         gtttgaaatcatcgtagtaatcgcgcgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaAAATCGCGTGa                                                                                                                                    <  1:534893‑M1/11‑1 (MQ=255)
                                                         gtttgaaatcatcgtagtaatcgcgcgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaAAATCGCGTGa                                                                                                                                    >  2:534893‑M1/84‑94 (MQ=255)
                                                         atTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaaa                                                                                     >  1:188537/1‑141 (MQ=255)
                                                         atTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaaa                                                                                     <  1:769110/141‑1 (MQ=255)
                                                          tttgaaatcatcgtagtaatcgcgcgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaAAATCGCGTGAAATAATAAGATGAATCGTTTGAAATAATCGTAGTAATCGCGCGAAAAt                                                                                    <  2:545206‑M1/59‑1 (MQ=255)
                                                           ttgaaatcatcgtagtaatcgcgcgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaAAATcgc                                                                                                                                        >  1:477118‑M1/82‑88 (MQ=255)
                                                           ttATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATc                                                                                   >  1:474908/1‑141 (MQ=255)
                                                            tataGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCa                                                                                  <  1:648990/141‑1 (MQ=255)
                                                             gaaatcatcgtagtaatcgcgcgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaAAATCGCGTGAaataa                                                                                                                               >  1:722482‑M1/80‑95 (MQ=255)
                                                              taGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACg                                                                                <  2:392266/141‑1 (MQ=255)
                                                               aGATATAATTAAAATTAATTAACATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTACTCGCGCGAAAATCACGt                                                                               <  1:309315/141‑1 (MQ=255)
                                                                  tataATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaa                                                                            <  2:452355/141‑1 (MQ=255)
                                                                     aattaaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaata                                                                         <  2:183154/141‑1 (MQ=255)
                                                                          aaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCag                                                                    <  1:441751/141‑1 (MQ=255)
                                                                            attaattaATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCagag                                                                  <  2:690443/141‑1 (MQ=255)
                                                                            attaattaATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCagag                                                                  <  2:769659/141‑1 (MQ=255)
                                                                            atcgcgcgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaa                                                                                                                                             >  1:272089‑M1/65‑66 (MQ=255)
                                                                                cgcgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaAAATcgcg                                                                                                                                       >  1:423477‑M1/61‑68 (MQ=255)
                                                                                  cgaaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaAAAt                                                                                                                                           >  1:98439‑M1/59‑62 (MQ=255)
                                                                                        tcgcgtgaaataatcagaggaatcgtttaaaatcatcgtagtaatcgcgcgaAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgc                                                                                            <  2:311381‑M1/51‑1 (MQ=255)
                                                                                        tcgcgtgaaataatcagaggaatcgtttaaaatcatcgtagtaatcgcgcgaAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgc                                                                                            >  1:311381‑M1/53‑103 (MQ=255)
                                                                                        tAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaa                                                      <  1:593620/141‑1 (MQ=255)
                                                                                         aaGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaaa                                                     >  1:298612/1‑141 (MQ=255)
                                                                                                aataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaAAATCGCGTGaaa                                                                                                                                  >  1:707731‑M1/45‑57 (MQ=255)
                                                                                                    atcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaAAATCGCGTGAAATAATCaga                                                                                                                          >  2:451251‑M1/41‑61 (MQ=255)
                                                                                                    aTGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtagta                                          >  1:110474/1‑141 (MQ=255)
                                                                                                       agaggaatcgtttgaaatcatcgtagtaatcgcgcgaAAAt                                                                                                                                           <  2:177861‑M1/4‑1 (MQ=255)
                                                                                                       agaggaatcgtttgaaatcatcgtagtaatcgcgcgaAAAt                                                                                                                                           >  1:177861‑M1/38‑41 (MQ=255)
                                                                                                        aGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcg                                      >  1:613937/1‑141 (MQ=255)
                                                                                                        aGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcg                                      <  1:215968/141‑1 (MQ=255)
                                                                                                          ggaatcgtttgaaatcatcgtagtaatcgcgcgaAAATc                                                                                                                                          >  1:35836‑M1/35‑39 (MQ=255)
                                                                                                          ggaatcgtttgaaatcatcgtagtaatcgcgcgaAAATc                                                                                                                                          <  2:35836‑M1/5‑1 (MQ=255)
                                                                                                            ttAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgcg                                  <  2:206501/141‑1 (MQ=255)
                                                                                                            ttAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgcg                                  <  1:316551/141‑1 (MQ=255)
                                                                                                             tAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAttactacgatgatttcaaacgattcctctgattatttcacgtgattttcgcgcga                                 <  1:308361‑M1/141‑56 (MQ=255)
                                                                                                             tAATCGTTCTGAAATACGAAAAATGATGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGGAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGa                                 <  1:33927/141‑1 (MQ=255)
                                                                                                                tCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGGGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaaa                              >  1:253457/1‑141 (MQ=255)
                                                                                                                   ttCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACg                                                                                >  1:618099/1‑88 (MQ=255)
                                                                                                                   ttCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACg                                                                                <  2:618099/88‑1 (MQ=255)
                                                                                                                    gaaatcatcgtagtaatcgcgcgaAAATCGCGTGAAATAATCAGAGGAATCGttt                                                                                                                >  1:602974‑M1/25‑55 (MQ=255)
                                                                                                                     cTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGCGGAATCGTTTGAAATCATCGTAGTAATCGCGCGTAACTGAAGTGAAATAATCAGAGGAATCGTTTGAGATCATCGTAGTAATAGCGCGAAAATCACg                         >  1:270620/1‑141 (MQ=17)
                                                                                                                     cTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACg                         >  2:127155/1‑141 (MQ=255)
                                                                                                                     cTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACg                         <  1:120311/141‑1 (MQ=255)
                                                                                                                     cTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACg                         >  1:514591/1‑141 (MQ=255)
                                                                                                                       gAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTg                       >  1:38865/1‑141 (MQ=255)
                                                                                                                       gAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTg                       >  1:281132/1‑141 (MQ=255)
                                                                                                                          atcgtagtaatcgcgcgaAAATCGCGTGAaataat                                                                                                                              >  2:101698‑M1/19‑35 (MQ=255)
                                                                                                                             cGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAaataa                 >  1:146495/1‑141 (MQ=255)
                                                                                                                              tagtaatcgcgcgaAAATCGCGTGAAATAATCAGAGGAATCg                                                                                                                   >  1:663723‑M1/15‑42 (MQ=255)
                                                                                                                              tagtaatcgcgcgaAAATCGCGTGAAATAATCAGAGGAATCg                                                                                                                   <  2:663723‑M1/28‑1 (MQ=255)
                                                                                                                               aaaaaTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaa                                                                            >  2:308153/1‑80 (MQ=255)
                                                                                                                               aaaaaTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaa                                                                            <  1:308153/80‑1 (MQ=255)
                                                                                                                                 aaaTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCag             >  1:107/1‑141 (MQ=255)
                                                                                                                                   atcgcgcgaAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaa                                                                                      <  2:272089‑M1/57‑1 (MQ=255)
                                                                                                                                       tgtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAt       >  1:185610/1‑141 (MQ=37)
                                                                                                                                       tgtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAt       >  1:157768/1‑141 (MQ=37)
                                                                                                                                          ggAAATCGCGTGAAATAATCAGAGGAATCGTTTTCAATCATTGGAGTAAGCGGGCGGAAAGCACGTGAAATAATCAGAGGAAGCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGt    <  1:508930/141‑1 (MQ=11)
                                                                                                                                            AAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt  >  2:550775‑M1/1‑141 (MQ=255)
                                                                                                                                            AAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt  >  2:185610‑M1/1‑141 (MQ=255)
                                                                                                                                            |                                                                                                                                            
GTATCGTTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTT  >  CP000730/52349‑52629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.