New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000730 52489 =64 (0.980)22 (0.380) 3/228 NT 24.9% intergenic (+99/‑574) USA300HOU_0043/USA300HOU_0044 hypothetical membrane protein/possible transcriptional regulator
?CP000730 = 52983 76 (1.320)intergenic (+593/‑80) USA300HOU_0043/USA300HOU_0044 hypothetical membrane protein/possible transcriptional regulator

Only 100 of 126 total aligned reads displayed.

GTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATG  >  CP000730/52846‑53120
                                                                                                                                         |                                                                                                                                         
gTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGGATGGTTTGAAATAATCGTAGTAATCGCGCGAaaa                                                                                                                                        <  2:70058‑M2/141‑4 (MQ=255)
    gAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATGGTTTGAAATCATCATAGTAATCGCGATAacatcgc                                                                                                                                    <  2:582832‑M2/141‑8 (MQ=255)
     aaaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATAAGAGGGATGGTTTGAGAACATCGAAGTAATCGCTCGAaaatcgcg                                                                                                                                   <  2:758498‑M2/141‑9 (MQ=255)
        tcatcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAaaatcgcgtga                                                                                                                                >  1:54314‑M2/1‑130 (MQ=255)
              tagtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACt                                                                                                                          >  1:252274/1‑141 (MQ=34)
               agtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATAAGAGGAATGGTTTGAAATAATCGTAGTAATAGCGCGAAAATCGCGTGAAATAcga                                                                                                                         >  2:71850/1‑139 (MQ=255)
                gtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTAt                                                                                                                        >  1:594108/1‑141 (MQ=35)
                 taATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATAAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATg                                                                                                                       >  2:358382/1‑141 (MQ=11)
                    tCGCGCGAACATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATAGTAGTAATCGCGCGAAAATCGCGTGAAATAATAAGATGGAAGGTTTGAGATCATAGTAGGAATCGTCCGACAATTGCGTGAAAtcatatatca                                                                                                                    >  2:141552/1‑132 (MQ=11)
                      gcgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGa                                                                                                                  <  1:111235/141‑1 (MQ=40)
                       cgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCTGGAAATAATCGGAGGAATCGTTTGAAATGAGCGTAGGAATCGCGCGAAAATCGCGGGAAATACTATGGTAGag                                                                                                                 >  1:196687/1‑140 (MQ=14)
                       cgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGGATCGTTTGAAAACATCGTAGTAATCGCGCGAAAATCGCGTGAAATAGGATGGTAGAc                                                                                                                 >  2:206419/1‑141 (MQ=255)
                         cgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATAAGATGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGTAATACTATGTTAGATgg                                                                                                               >  2:225840/1‑141 (MQ=11)
                            aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGttt                                                                                                            >  1:438980/1‑141 (MQ=255)
                            aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGttt                                                                                                            >  1:504475/1‑141 (MQ=255)
                               tCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAg                                                                                                         <  1:545206/141‑1 (MQ=255)
                                 gcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTa                                                                                                       <  2:248973/141‑1 (MQ=255)
                                 gcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTa                                                                                                       >  1:210726/1‑141 (MQ=255)
                                   gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAaaatcgcgtgaaataatcagaggaatggtttgaaatca                                                                                                     <  2:100513‑M2/141‑39 (MQ=255)
                                   gTGAAATAATCAGAGGAATCGTTTGAAATCAGCGTAGTAATCGCGCGACAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCAAaaatcgcgtgaaataatcagagggatcgattgagatca                                                                                                     <  2:468102‑M2/141‑39 (MQ=255)
                                     gAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAaaatcgcgtgaaataatcagaggaatcgtttgaaatcatc                                                                                                   <  2:168406‑M2/141‑41 (MQ=255)
                                        ataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAaaatcgcgtgaaataataagagggatcgtttgagaacatcgat                                                                                                <  1:132903‑M2/141‑44 (MQ=255)
                                           atCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagta                                                                                             <  1:707142‑M2/141‑47 (MQ=255)
                                             cAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaat                                                                                           <  1:644975‑M2/141‑49 (MQ=255)
                                             cAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGt                                                                                           <  1:460433/141‑1 (MQ=255)
                                              agagGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAaaatcgcgtgaaataataagggggatcgtttgaaatcattgtaggaatc                                                                                          <  1:556173‑M2/141‑50 (MQ=255)
                                              agagGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTa                                                                                          >  1:736820/1‑141 (MQ=255)
                                              agagGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTa                                                                                          <  1:19381/141‑1 (MQ=255)
                                                agGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAaaatcgcgtgaaataatcagagggatcgtttgagatcatcgtagtaatcgc                                                                                        <  2:404469‑M2/141‑52 (MQ=255)
                                                agGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTAtt                                                                                        <  1:248403/141‑1 (MQ=255)
                                                  gAATCGTTTGAACTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAAGACTATGGTAGACGGTTTGAGTAAATTAATGGAGTAtttt                                                                                      >  1:580783/1‑141 (MQ=255)
                                                   aaTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTCAGAGAGATCGTTTGAAATCATCGTAGTAATAGCGCGAaaatcgcgtgaaataataagaggaatcgtttgaaaacatagtagtaatagagcg                                                                                     <  2:192173‑M2/141‑55 (MQ=255)
                                                   aaTCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATTAGAGGAATCGTTTGAAATCATCGAAGGAATCGCGCGAaaatagcgtgaaataatcagagggatggtttgagatcgtcgtagtaattgcgag                                                                                     <  2:696618‑M2/141‑55 (MQ=255)
                                                     tCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAaaatcgcgtgaaataatcagagggatcggttgagatcatcgtaggaatagagtgaa                                                                                   <  2:473189‑M2/141‑57 (MQ=255)
                                                     tCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAat                                                                                   >  1:531456/1‑141 (MQ=255)
                                                       gTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAaaatcgcgtga                                                                                                                                >  2:534893‑M2/1‑83 (MQ=255)
                                                       gTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAatga                                                                                 >  2:130677/1‑139 (MQ=255)
                                                        tttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAaaatcgcgtgaaataataagatgaatcgtttgaaataatcgtagtaatcgcgcgaaaat                                                                                <  2:545206‑M2/141‑60 (MQ=255)
                                                         ttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAaaatcgc                                                                                                                                    <  2:477118‑M2/88‑8 (MQ=255)
                                                         ttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAaaatcgc                                                                                                                                    >  1:477118‑M2/1‑81 (MQ=255)
                                                          tGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTa                                                                              <  1:53418/141‑1 (MQ=255)
                                                           gAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAaaatcgcgtgaaataa                                                                                                                           >  1:722482‑M2/1‑79 (MQ=255)
                                                           gAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTAt                                                                             <  1:601961/141‑1 (MQ=255)
                                                              atcatcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAGATCATCGTAGTAATAGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATAAATGGAGTATTTTAATAAATATGGt                                                                          >  2:571398/1‑141 (MQ=18)
                                                              atcatcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGt                                                                          <  1:2887/141‑1 (MQ=255)
                                                                catcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGttt                                                                        <  1:473189/141‑1 (MQ=255)
                                                                 atcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGtgg                                                                                                                   >  2:462349/1‑95 (MQ=38)
                                                                 atcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAg                                                                                                                   <  1:462349/97‑1 (MQ=40)
                                                                 atcGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAACCGTTTGAAATCATCGTAGTAATCGCGCGAaaatcacgtgaaataatcagaggaatcgtttgaaatcatcgta                                                                                                >  2:172257‑M2/1‑73 (MQ=255)
                                                                    gtagtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTggag                                                                    <  2:163038/141‑1 (MQ=255)
                                                                     tagtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTggagg                                                                   <  1:283283/141‑1 (MQ=255)
                                                                       gtaATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGaa                                                                 <  2:580783/141‑1 (MQ=255)
                                                                         aaTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAAtt                                                               >  1:80920/1‑141 (MQ=255)
                                                                          aTCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAaa                                                                                                                                         >  1:272089‑M2/1‑64 (MQ=255)
                                                                           tCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGc                                                             <  1:532810/141‑1 (MQ=255)
                                                                              cgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAaaatcgcg                                                                                                                                   >  1:423477‑M2/1‑60 (MQ=255)
                                                                              cgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGtt                                                          <  1:304795/141‑1 (MQ=255)
                                                                              cgcgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGAATTTTAATATTTATGGTTTGGAGGAATTGCGtt                                                          >  2:454515/1‑141 (MQ=255)
                                                                                cgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAaaat                                                                                                                                       >  1:98439‑M2/1‑58 (MQ=255)
                                                                                cgAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGc                                                        >  1:149711/1‑141 (MQ=255)
                                                                                   aaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAACTTAATGGAGTATGTTAATATTTATGGTTTGGAGGAATTGCGTTGCATa                                                     >  2:36863/1‑141 (MQ=255)
                                                                                    aaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCATAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATag                                                    <  1:504143/141‑1 (MQ=255)
                                                                                     aTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAaaa                                                                                                                                        >  1:286543‑M2/1‑53 (MQ=255)
                                                                                     aTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATaga                                                   <  1:447120/141‑1 (MQ=255)
                                                                                      tCGCGTGAAATAATCAGAGGAATCGTTTAAAATCATCGTAGTAATCGCGCGAaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgc                                                                                        >  1:311381‑M2/1‑52 (MQ=255)
                                                                                      tCGCGTGAAATAATCAGAGGAATCGTTTAAAATCATCGTAGTAATCGCGCGAaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgc                                                                                        <  2:311381‑M2/103‑52 (MQ=255)
                                                                                          gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATg                                                                                               <  2:747979/92‑1 (MQ=255)
                                                                                          gTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATg                                                                                               >  1:747979/1‑92 (MQ=255)
                                                                                              aataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAaaatcgcgtgaaa                                                                                                                              >  1:707731‑M2/1‑44 (MQ=255)
                                                                                              aataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTaaa                                          <  1:60054/141‑1 (MQ=255)
                                                                                               ataatCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAat                                         <  1:332065/141‑1 (MQ=255)
                                                                                                   tCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAatatat                                     <  1:449688/141‑1 (MQ=255)
                                                                                                    cAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAAtatata                                    >  1:423385/1‑141 (MQ=255)
                                                                                                    cAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGATAAACGGTTTGAGTAAATCGAAGGAGTCGCGCGAAAATTGCGGGATGTAGGAAGTGCGATGGATAGAGATAGTCAAtatata                                    >  1:22902/1‑141 (MQ=9)
                                                                                                     agagGAATCGTTTGAAATCATCGTAGTAATCGCGCGAaaat                                                                                                                                       >  1:177861‑M2/1‑37 (MQ=255)
                                                                                                      gagGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATCAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATaga                                  >  1:32459/1‑141 (MQ=255)
                                                                                                       agGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATagag                                 >  1:219294/1‑141 (MQ=255)
                                                                                                       agGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATagag                                 >  2:398117/1‑141 (MQ=255)
                                                                                                        ggAATCGTTTGAAATCATCGTAGTAATCGCGCGAaaatc                                                                                                                                      <  2:35836‑M2/39‑6 (MQ=255)
                                                                                                        ggAATCGTTTGAAATCATCGTAGTAATCGCGCGAaaatc                                                                                                                                      >  1:35836‑M2/1‑34 (MQ=255)
                                                                                                             cGTTTGAAATCATCGTAGTAATCGCGCGAAAAGCGCGTGAAATACTATGGTAGACGGGTTGAGTAAATTAATGGAGTATTTTAATATTTAGGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAg                           >  2:505705/1‑141 (MQ=255)
                                                                                                                ttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATNGAGAAAGTAAATNTATAGAGTATAAGaaa                        <  1:696618/141‑1 (MQ=255)
                                                                                                                ttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGaaa                        >  1:102868/1‑141 (MQ=255)
                                                                                                                ttGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGaaa                        <  1:758498/141‑1 (MQ=255)
                                                                                                                    aaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGa                                                                                                          <  1:257721/55‑1 (MQ=255)
                                                                                                                    aaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGa                                                                                                          >  2:257721/1‑55 (MQ=255)
                                                                                                                    aaTCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCAc                    <  1:358382/141‑1 (MQ=255)
                                                                                                                        atcGTAGTAATCGCGCGAaaatcgcgtgaaataat                                                                                                                          >  2:101698‑M2/1‑18 (MQ=255)
                                                                                                                        atcGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGaaa                >  2:484838/1‑141 (MQ=255)
                                                                                                                            tagtaATCGCGCGAaaatcgcgtgaaataatcagaggaatcg                                                                                                               <  2:663723‑M2/42‑29 (MQ=255)
                                                                                                                            tagtaATCGCGCGAaaatcgcgtgaaataatcagaggaatcg                                                                                                               >  1:663723‑M2/1‑14 (MQ=255)
                                                                                                                            tagtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGa            >  1:216779/1‑141 (MQ=255)
                                                                                                                            tagtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGa            <  1:89942/141‑1 (MQ=255)
                                                                                                                            tagtaATCGCGCGAAAATCACGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGa            <  1:525511/141‑1 (MQ=255)
                                                                                                                              gtaATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGAtt          >  2:319461/1‑141 (MQ=255)
                                                                                                                                 aTCGCGCGAaaatcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaa                                                                                  <  2:272089‑M2/66‑58 (MQ=255)
                                                                                                                                  tCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCt      >  2:384600/1‑141 (MQ=255)
                                                                                                                                  tCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCt      <  2:219203/141‑1 (MQ=255)
                                                                                                                                    gcgcgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTaa    <  2:654656/141‑1 (MQ=255)
                                                                                                                                      gcgAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATg  >  1:564734/1‑141 (MQ=255)
                                                                                                                                         |                                                                                                                                         
GTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCGCGTGAAATACTATGGTAGACGGTTTGAGTAAATTAATGGAGTATTTTAATATTTATGGTTTGGAGGAATTGCGTTGCATAGAGAAAGTAAATATATAGAGTATAAGAAATCACGAAAAGGATTATCTAATG  >  CP000730/52846‑53120

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.