New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 368778	64 (0.980)	6 (0.100)	3/248	NT	9.5%	intergenic (+212/+66)	nagC/USA300HOU_0337	possible transcriptional regulator/possible RpiR family transcriptional regulator
	?	CP000730	= 368819	53 (0.850)					intergenic (+253/+25)	nagC/USA300HOU_0337	possible transcriptional regulator/possible RpiR family transcriptional regulator

CACATCACACTCTATCTAGGACCAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAATG  >  CP000730/368640‑368915                                                                                                                                            |                                                                                                                                          cacaTCACACTCTATCTAGGACCAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAg                                                                                                                                         >  2:574218/1‑141 (MQ=255) cacaTCACACTCTATCTAGGACCAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAg                                                                                                                                         <  1:735905/141‑1 (MQ=255)  acaTAACACTCTATCTAGGAAAAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGAAAAAAAAAAAAAAAAGCACCTAGc                                                                                                                                        <  2:164400/141‑1 (MQ=255)   caTCACACTCTATCTAGGACCAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCa                                                                                                                                       <  2:342140/141‑1 (MQ=255)   caTCACACTCTATCTAGGACCAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCa                                                                                                                                       <  1:742250/141‑1 (MQ=255)    aTCACACTCTATCTAGGACCAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAACTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCaa                                                                                                                                      <  1:400302/141‑1 (MQ=255)     tCACACTCTATCTAGGACCAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAAc                                                                                                                                     >  2:316614/1‑141 (MQ=255)        cacTCTATCTAGGACCAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCg                                                                                                                                  <  1:115953/141‑1 (MQ=255)         acTCTATCTAGGACCAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATGAAAAAAGCACCTAGCAACTCGt                                                                                                                                 >  1:424987/1‑141 (MQ=255)            ctatctaGGACCCATCTAAACTCTATCAACCAACAGTGTGCCACGGGCAAATTCAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGCAAGTGTAGAAACATATTTGGTATTGATATTAAATAAGCACCTAGCAACTCGTTgg                                                                                                                              <  2:227647/141‑1 (MQ=255)                          tCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACgatga                                                                                                                <  1:629720/141‑1 (MQ=255)                          tCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACgatga                                                                                                                <  1:369846/141‑1 (MQ=255)                           cTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACgatgat                                                                                                               >  1:193040/1‑141 (MQ=255)                            tAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGAtt                                                                                                              <  2:112414/141‑1 (MQ=255)                             aaaCTATATCAACCAACAGTGTGCCACGGGGAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTg                                                                                                             >  2:705438/1‑141 (MQ=255)                              aaCTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGt                                                                                                            >  1:243888/1‑141 (MQ=255)                                cTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCt                                                                                                          >  2:596279/1‑141 (MQ=255)                                   tatCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAGTTAAAAAAGCACCTgcaactgtagacaatcatcgtgattgtcccaacgag                                                                                                       <  2:79859‑M1/141‑37 (MQ=255)                                   tatCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTgcaactgtagacaatcatcgtgattgtcccaacgag                                                                                                       <  1:58429‑M1/141‑37 (MQ=255)                                     tCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGt                                                                                                     <  2:476410/141‑1 (MQ=255)                                     tCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGt                                                                                                     >  2:435448/1‑141 (MQ=255)                                       aaccaacAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTg                                                                                                   >  1:188363/1‑141 (MQ=255)                                        accaacAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGc                                                                                                  <  1:765911/141‑1 (MQ=255)                                            aCAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCaggt                                                                                              >  2:299801‑M2/1‑137 (MQ=255)                                             cAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTgcaactgtagacaatcatcgtgattgtcccaacgagttgctaggtg                                                                                             <  2:693289‑M1/141‑47 (MQ=255)                                             cAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCaggtg                                                                                             <  1:647359‑M2/141‑6 (MQ=255)                                              aGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTgcaactgtagacaatcatcgtgattgtcccaacgagttgctaggtgc                                                                                            <  1:440448‑M1/141‑48 (MQ=255)                                              aGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATAGTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTgg                                                                                            >  1:163553/1‑141 (MQ=255)                                                 gtgCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTCTTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGAtt                                                                                         <  2:410809/141‑1 (MQ=255)                                                 gtgCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGAtt                                                                                         >  2:185600/1‑141 (MQ=255)                                                 gtgCCACGGACAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAACAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGAtt                                                                                         <  1:589492/141‑1 (MQ=255)                                                  tgCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGAttt                                                                                        <  1:472826/141‑1 (MQ=255)                                                  tgCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGAttt                                                                                        <  1:372081/141‑1 (MQ=255)                                                  tgCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGAAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGAttt                                                                                        >  1:594159/1‑141 (MQ=255)                                                    ccACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGa                                                                                      >  2:5661/1‑141 (MQ=255)                                                    acaCGAGAAAAATAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAAAAAAAAAAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTagcaactgtagacaatcatcgtgattgtcccaacgagttgctaggtgcttttt                                                                                      <  2:784800‑M1/140‑54 (MQ=255)                                                      aCGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAat                                                                                    <  2:730885/141‑1 (MQ=255)                                                             aattaaattGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATAtactac                                                                             >  2:87381/1‑141 (MQ=255)                                                                aaaataGAAGAAGATGAG‑ATATTAAAATTTTAAAAAAAAAAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAg                                                                          <  2:539382/140‑1 (MQ=255)                                                                  aattGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTagcaactgtagacaatcatcgtgattgtcccaacgagttgctaggtgcttttttaatttcaatacca                                                                        <  1:737203‑M1/141‑68 (MQ=255)                                                                   attGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTa                                                                       <  2:460821/141‑1 (MQ=255)                                                                    ttGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTAt                                                                      >  1:337038/1‑141 (MQ=255)                                                                     tGAAGAAGCTGCGAATATTAAAAGTCAAG‑AAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACTGTTGCAGGTTGATTTGAATATACTACTAGTTAtt                                                                     >  2:199362/1‑141 (MQ=255)                                                                     tGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTAtt                                                                     <  1:194467/141‑1 (MQ=255)                                                                     tGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTAtt                                                                     <  2:719789/141‑1 (MQ=255)                                                                      gaagaaGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTAttt                                                                    <  2:8923/141‑1 (MQ=255)                                                                       aagaagCTGAG‑ATATTAAAATTTTAGAAAAAGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATttg                                                                   <  2:439466/141‑1 (MQ=255)                                                                        agaagCTTAT‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATttgt                                                                  <  1:144477/141‑1 (MQ=255)                                                                              tGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTa                                                            >  1:750048/1‑141 (MQ=255)                                                                                ag‑aTATTAACATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAgg                                                          >  1:690826/1‑141 (MQ=255)                                                                                ag‑aTATTAAAATTTTAGAAAATGTAAAAAAATATTTGGAAAAGAAAATAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAgg                                                          <  2:552277/141‑1 (MQ=255)                                                                                 g‑aTATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGa                                                         <  2:533122/141‑1 (MQ=255)                                                                                    tatTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGata                                                       <  1:239435/141‑1 (MQ=255)                                                                                          aaTTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGAt                                                 <  2:27826/141‑1 (MQ=255)                                                                                            ttttAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGAttt                                               <  1:45194/141‑1 (MQ=255)                                                                                                aGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGCGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTa                                           >  2:605517/1‑141 (MQ=255)                                                                                                 gAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTAt                                          <  1:766799/141‑1 (MQ=255)                                                                                                   aaaTGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGt                                        <  1:472418/141‑1 (MQ=255)                                                                                                    aaTGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGtt                                       <  1:195937/141‑1 (MQ=255)                                                                                                    aaTGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGtt                                       <  1:221593/141‑1 (MQ=255)                                                                                                    aaTGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATGTAGTATGtt                                       <  1:692099/141‑1 (MQ=255)                                                                                                       gTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGAt                                    >  1:533814/1‑141 (MQ=255)                                                                                                           aaaaaTATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGt                                >  1:232267/1‑141 (MQ=255)                                                                                                           aaaaaTATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGt                                <  1:522235/141‑1 (MQ=255)                                                                                                               atatTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGa                            <  1:436272/141‑1 (MQ=255)                                                                                                                  tttGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTc                         <  2:178386/141‑1 (MQ=255)                                                                                                                    tGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCtaggtgcttttttaatttcaataccaaatatttttttacattttctaaaattttaatatctcagcttcttcaatt                       <  1:737203‑M2/141‑76 (MQ=255)                                                                                                                    tGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAg                       >  1:78854/1‑141 (MQ=255)                                                                                                                       tATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGAtt                    <  2:228933/141‑1 (MQ=255)                                                                                                                        aTTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTc                   <  1:735907/141‑1 (MQ=255)                                                                                                                         ttGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCg                  <  1:10848/141‑1 (MQ=255)                                                                                                                         ttGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCg                  <  2:495688/141‑1 (MQ=255)                                                                                                                           gAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTa                <  1:87381/141‑1 (MQ=255)                                                                                                                              aTTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCTGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTAttt             <  1:622829/141‑1 (MQ=255)                                                                                                                              aTTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTAttt             >  1:257658/1‑141 (MQ=255)                                                                                                                               ttAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTAtttt            >  2:419698/1‑141 (MQ=255)                                                                                                                                  aaaaaGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCtaggtgcttttttaatttcaataccaaatattttttttttttttttaaaattttaatatctcagcttcttcaatttatttttctcgtgt         <  2:784800‑M2/141‑90 (MQ=255)                                                                                                                                   aaaaGCANCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCtaa        <  2:590286/141‑1 (MQ=255)                                                                                                                                   aaaaGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCtaa        <  2:293303/141‑1 (MQ=255)                                                                                                                                     aaGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCtaata      >  1:733050/1‑141 (MQ=255)                                                                                                                                       gCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCaggtgcttttttaatttcaataccaaatatttttttacattttctaaaattttaatatctcagcttcttcaatttaatttgcccgtggcacact    <  1:440448‑M2/141‑95 (MQ=255)                                                                                                                                        cACCTgcaactgtagacaatcatcgtgattgtcccaacgagttgctaggtgcttttttaatttcaataccaaatatttttttacattttctaaaattttaatatctcagcttcttcaatttaatttgcccgtggcacactg   <  1:647359‑M1/141‑137 (MQ=255)                                                                                                                                        cACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCaggtgcttttttaatttcaataccaaatatttttttacattttctaaaattttaatatctcagcttcttcaatttaatttgcccgtggcacactg   <  2:693289‑M2/141‑96 (MQ=255)                                                                                                                                        cACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAAt   >  1:160752/1‑141 (MQ=255)                                                                                                                                         aCCTgcaactgtagacaatcatcgtgattgtcccaacgagttgctaggtgcttttttaatttcaataccaaatatttttttacattttctaaaattttaatatctcagcttcttcaatttaatttgcccgtggcacactgt  >  2:299801‑M1/1‑4 (MQ=255)                                                                                                                                            |                                                                                                                                          CACATCACACTCTATCTAGGACCAATCTAAACTATATCAACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAATG  >  CP000730/368640‑368915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.