New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 368778	64 (0.980)	6 (0.100)	3/248	NT	9.5%	intergenic (+212/+66)	nagC/USA300HOU_0337	possible transcriptional regulator/possible RpiR family transcriptional regulator
	?	CP000730	= 368819	53 (0.850)					intergenic (+253/+25)	nagC/USA300HOU_0337	possible transcriptional regulator/possible RpiR family transcriptional regulator

ACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAATGATAACTCACGATATCGATTAAAAAGAGTGTCGCAATTT  >  CP000730/368679‑368953                                                                                                                                              |                                                                                                                                       accaacAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGc                                                                                                                                        <  1:765911/141‑1 (MQ=255)     aCAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCaggt                                                                                                                                    >  2:299801‑M2/1‑137 (MQ=255)      cAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCaggtg                                                                                                                                   <  1:647359‑M2/141‑6 (MQ=255)       aGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATAGTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTgg                                                                                                                                  >  1:163553/1‑141 (MQ=255)          gtgCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTCTTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGAtt                                                                                                                               <  2:410809/141‑1 (MQ=255)          gtgCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGAtt                                                                                                                               >  2:185600/1‑141 (MQ=255)          gtgCCACGGACAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAACAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGAtt                                                                                                                               <  1:589492/141‑1 (MQ=255)           tgCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGAttt                                                                                                                              <  1:372081/141‑1 (MQ=255)           tgCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGAttt                                                                                                                              <  1:472826/141‑1 (MQ=255)           tgCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGAAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGAttt                                                                                                                              >  1:594159/1‑141 (MQ=255)             ccACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGa                                                                                                                            >  2:5661/1‑141 (MQ=255)               aCGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAat                                                                                                                          <  2:730885/141‑1 (MQ=255)                      aattaaattGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATAtactac                                                                                                                   >  2:87381/1‑141 (MQ=255)                         aaaataGAAGAAGATGAG‑ATATTAAAATTTTAAAAAAAAAAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAg                                                                                                                <  2:539382/140‑1 (MQ=255)                            attGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTa                                                                                                             <  2:460821/141‑1 (MQ=255)                             ttGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTAt                                                                                                            >  1:337038/1‑141 (MQ=255)                              tGAAGAAGCTGCGAATATTAAAAGTCAAG‑AAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACTGTTGCAGGTTGATTTGAATATACTACTAGTTAtt                                                                                                           >  2:199362/1‑141 (MQ=255)                              tGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTAtt                                                                                                           <  2:719789/141‑1 (MQ=255)                              tGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTAtt                                                                                                           <  1:194467/141‑1 (MQ=255)                               gaagaaGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTAttt                                                                                                          <  2:8923/141‑1 (MQ=255)                                aagaagCTGAG‑ATATTAAAATTTTAGAAAAAGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATttg                                                                                                         <  2:439466/141‑1 (MQ=255)                                 agaagCTTAT‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATttgt                                                                                                        <  1:144477/141‑1 (MQ=255)                                       tGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTa                                                                                                  >  1:750048/1‑141 (MQ=255)                                         ag‑aTATTAACATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAgg                                                                                                >  1:690826/1‑141 (MQ=255)                                         ag‑aTATTAAAATTTTAGAAAATGTAAAAAAATATTTGGAAAAGAAAATAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAgg                                                                                                <  2:552277/141‑1 (MQ=255)                                          g‑aTATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGa                                                                                               <  2:533122/141‑1 (MQ=255)                                             tatTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGata                                                                                             <  1:239435/141‑1 (MQ=255)                                                   aaTTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGAt                                                                                       <  2:27826/141‑1 (MQ=255)                                                     ttttAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGAttt                                                                                     <  1:45194/141‑1 (MQ=255)                                                         aGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGCGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTa                                                                                 >  2:605517/1‑141 (MQ=255)                                                          gAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTAt                                                                                <  1:766799/141‑1 (MQ=255)                                                            aaaTGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGt                                                                              <  1:472418/141‑1 (MQ=255)                                                             aaTGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGtt                                                                             <  1:195937/141‑1 (MQ=255)                                                             aaTGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGtt                                                                             <  1:221593/141‑1 (MQ=255)                                                             aaTGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATGTAGTATGtt                                                                             <  1:692099/141‑1 (MQ=255)                                                                gTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGAt                                                                          >  1:533814/1‑141 (MQ=255)                                                                    aaaaaTATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGt                                                                      <  1:522235/141‑1 (MQ=255)                                                                    aaaaaTATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGt                                                                      >  1:232267/1‑141 (MQ=255)                                                                        atatTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGa                                                                  <  1:436272/141‑1 (MQ=255)                                                                           tttGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTc                                                               <  2:178386/141‑1 (MQ=255)                                                                             tGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCtaggtgcttttttaatttcaataccaaatatttttttacattttctaaaattttaatatctcagcttcttcaatt                                                             <  1:737203‑M2/141‑76 (MQ=255)                                                                             tGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAg                                                             >  1:78854/1‑141 (MQ=255)                                                                                tATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGAtt                                                          <  2:228933/141‑1 (MQ=255)                                                                                 aTTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTc                                                         <  1:735907/141‑1 (MQ=255)                                                                                  ttGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCg                                                        <  1:10848/141‑1 (MQ=255)                                                                                  ttGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCg                                                        <  2:495688/141‑1 (MQ=255)                                                                                    gAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTa                                                      <  1:87381/141‑1 (MQ=255)                                                                                       aTTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCTGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTAttt                                                   <  1:622829/141‑1 (MQ=255)                                                                                       aTTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTAttt                                                   >  1:257658/1‑141 (MQ=255)                                                                                        ttAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTAtttt                                                  >  2:419698/1‑141 (MQ=255)                                                                                           aaaaaGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCtaggtgcttttttaatttcaataccaaatattttttttttttttttaaaattttaatatctcagcttcttcaatttatttttctcgtgt                                               <  2:784800‑M2/141‑90 (MQ=255)                                                                                            aaaaGCANCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCtaa                                              <  2:590286/141‑1 (MQ=255)                                                                                            aaaaGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCtaa                                              <  2:293303/141‑1 (MQ=255)                                                                                              aaGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCtaata                                            >  1:733050/1‑141 (MQ=255)                                                                                                gCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCaggtgcttttttaatttcaataccaaatatttttttacattttctaaaattttaatatctcagcttcttcaatttaatttgcccgtggcacact                                          <  1:440448‑M2/141‑95 (MQ=255)                                                                                                 cACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCaggtgcttttttaatttcaataccaaatatttttttacattttctaaaattttaatatctcagcttcttcaatttaatttgcccgtggcacactg                                         <  2:693289‑M2/141‑96 (MQ=255)                                                                                                 cACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAAt                                         >  1:160752/1‑141 (MQ=255)                                                                                                       gCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGCTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAATGATAAc                                   <  2:750918/141‑1 (MQ=255)                                                                                                           cTCGTTGGGACAATCACGATGATTGTCTACAGTTGCaggtgcttttttaatttcaataccaaatatttttttacattttctaaaattttaatatctcagcttcttcaatttaatttgcccgtggcacactgttggttgata                               <  1:58429‑M2/141‑106 (MQ=255)                                                                                                           cTCGTTGGGACAATCACGATGATTGTCTACAGTTGCaggtgcttttttaacttcaataccaaatatttttttacattttctaaaattttaatatctcagcttcttcaatttaatttgcccgtggcacactgttggttgata                               <  2:79859‑M2/141‑106 (MQ=255)                                                                                                               ttGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAATGATAACTCACGata                           >  2:305118/1‑141 (MQ=255)                                                                                                                  ggACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAATGATAACTCACGATATCg                        <  2:727246/141‑1 (MQ=255)                                                                                                                        tCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAATGATAACTCACGATATCGATTaaa                  <  1:347976/141‑1 (MQ=255)                                                                                                                         cACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAATGATAACTCACGATATCGATTaaaa                 <  1:185600/141‑1 (MQ=255)                                                                                                                                 ttgtgtagggTTGTAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAATGATAACTCACGATATCGATTAAAAAGAGTGTc         <  2:424987/132‑1 (MQ=255)                                                                                                                                 ttGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAATGATAACTCACGATATCGATTAAAAAGAGTGTc         <  2:182714/141‑1 (MQ=255)                                                                                                                                  tGTCTACAGTTGCAGGTGTATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAATGATAACTCACGATATCGATTAAAAAGAGTGTCg        <  1:438653/141‑1 (MQ=255)                                                                                                                                   gTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAATGATAACTCACGATATCGATTAAAAAGAGTGTCGc       <  1:52965/141‑1 (MQ=255)                                                                                                                                      tACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAATGATAACTCACGATATCGATTAAAAAGAGTGTCGCAAt    <  2:344272/141‑1 (MQ=255)                                                                                                                                        cAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAATGATAACTCACGATATCGATTAAAAAGAGTGTCGCAAttt  <  2:386639/141‑1 (MQ=255)                                                                                                                                              |                                                                                                                                       ACCAACAGTGTGCCACGGGCAAATTAAATTGAAGAAGCTGAG‑ATATTAAAATTTTAGAAAATGTAAAAAAATATTTGGTATTGAAATTAAAAAAGCACCTAGCAACTCGTTGGGACAATCACGATGATTGTCTACAGTTGCAGGTGGATTTGAATATACTACTAGTTATTTGTTGTCTAGGATAATAGATTTAGTATGTTGATAAGTTTGACTCAGATTCGTATTTTCTAATAAATGATAACTCACGATATCGATTAAAAAGAGTGTCGCAATTT  >  CP000730/368679‑368953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.