New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 940821	60 (0.920)	3 (0.050)	3/246	NT	5.1%	intergenic (+2/+54)	comA/USA300HOU_0905	hypothetical protein/hypothetical protein
	?	CP000730	= 940872	55 (0.880)					intergenic (+53/+3)	comA/USA300HOU_0905	hypothetical protein/hypothetical protein

AGATGGTCGTGTTACTGCGACAGCTGAAATTATTCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGG  >  CP000730/940681‑940961                                                                                                                                             |                                                                                                                                             aGATGGTCGTGTTACTGCGACAGCTGAAATTATTCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAA                                                                                                                                              <  1:406377‑M1/141‑1 (MQ=255)  gATGGTCGTGTTACTGCGACAGCTGAAATTATTCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAg                                                                                                                                             >  1:8785/1‑141 (MQ=255)  gATGGTCGTGTTACTGCGACAGCTGAAATTATTCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAg                                                                                                                                             >  1:642740/1‑141 (MQ=255)  gATGGTCGTGTTACTGCGACAGCTGAAATTATTCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAg                                                                                                                                             <  1:260302/141‑1 (MQ=255)   aTGGTCGTGTTACTGCGACAGCTGAAATTATTCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAta                                                                                                                                            <  2:728114‑M1/141‑3 (MQ=255)    tGGTCGTGTTACTGCGACAGCTGAAATTATTCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGaa                                                                                                                                           >  1:271620/1‑141 (MQ=255)       tCGTGTTACTGCGACAGCTGAAATTATTCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTg                                                                                                                                        >  1:388453/1‑141 (MQ=255)           gtTACTGCGACAGCTGAAATTATTCATCGAGGTAAGTCGACAAATGTATGAGATATAACACTTATGAATGACTAAGTGCTATTGATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTac                                                                                                                                    <  1:744194/141‑2 (MQ=255)               cTGCGACAGCTGAAATTATTCAACGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGa                                                                                                                                <  1:414530/141‑1 (MQ=255)                tGCGACAGCTGAAATTATTCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGaa                                                                                                                               <  2:654351/141‑1 (MQ=255)                   gACAGCTGAAATTATTCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATg                                                                                                                            >  1:123782/1‑141 (MQ=255)                           aaaTTATTCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATgaga                                                                                                                    >  1:155494/1‑141 (MQ=255)                                attCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTc                                                                                                               >  2:184862/1‑141 (MQ=255)                                 ttCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCa                                                                                                              <  1:16820/141‑1 (MQ=255)                                 ttCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCa                                                                                                              <  2:182495/141‑1 (MQ=255)                                  tCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAaaactgctagccgtagttatgaatatctcataa                                                                                                             <  2:757704‑M1/141‑34 (MQ=255)                                  tCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCAt                                                                                                             >  1:673410/1‑141 (MQ=255)                                  tCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCAt                                                                                                             >  1:682192/1‑141 (MQ=255)                                  tCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCAt                                                                                                             >  2:346502/1‑141 (MQ=255)                                      cGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACt                                                                                                         <  1:38587/141‑1 (MQ=255)                                       gAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTa                                                                                                        <  1:439433/141‑1 (MQ=255)                                         ggTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAaaactgctagccgtagttatgaatatctcataacatttca                                                                                                      <  1:95171‑M1/141‑41 (MQ=255)                                            aaGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCt                                                                                                   <  1:601596/141‑1 (MQ=255)                                            aaGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCt                                                                                                   <  2:49787/141‑1 (MQ=255)                                             aGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAaaactgctagccgtagttatgaatatctcataacatttcagcta                                                                                                  <  2:131775‑M1/141‑45 (MQ=255)                                             aGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTa                                                                                                  >  1:414894/1‑141 (MQ=255)                                              gTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAg                                                                                                 >  2:138784/1‑141 (MQ=255)                                               tCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGc                                                                                                <  1:402466/141‑1 (MQ=255)                                                   cacaTGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGtt                                                                                            >  1:323744/1‑141 (MQ=255)                                                    acaTGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGttt                                                                                           >  1:548955/1‑141 (MQ=255)                                                     cATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTt                                                                                          <  2:386819‑M2/141‑2 (MQ=255)                                                        gTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTtttt                                                                                       >  2:327725‑M2/1‑137 (MQ=255)                                                        gTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTtttt                                                                                       <  2:157113‑M2/141‑5 (MQ=255)                                                           tGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATg                                                                                    >  1:237501/1‑141 (MQ=255)                                                            gggATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATgc                                                                                   <  1:680292/141‑1 (MQ=255)                                                              gATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATgcgc                                                                                 <  2:155494/141‑1 (MQ=255)                                                                  taAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCtata                                                                             >  1:428143/1‑141 (MQ=255)                                                                        ttAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATAttgttg                                                                       <  2:126545/141‑1 (MQ=255)                                                                          aaGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTa                                                                     >  1:613000/1‑141 (MQ=255)                                                                            gAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGt                                                                   <  1:782983/141‑1 (MQ=255)                                                                            gAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGt                                                                   <  1:98619/141‑1 (MQ=255)                                                                             aaTGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGtt                                                                  <  2:304813/141‑1 (MQ=255)                                                                              aTGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGttt                                                                 >  1:480929/1‑141 (MQ=255)                                                                                      gAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATg                                                         >  1:757668/1‑141 (MQ=255)                                                                                       aaCAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGc                                                        <  1:610533/141‑1 (MQ=255)                                                                                         cAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCtt                                                      <  1:571438/141‑1 (MQ=255)                                                                                          aattaattACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTg                                                     >  1:759778/1‑141 (MQ=255)                                                                                               attaCAGTTATGTGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCaa                                                <  2:361639/141‑1 (MQ=255)                                                                                                   cAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATaa                                                                                                           >  2:591655/1‑78 (MQ=255)                                                                                                   cAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATaa                                                                                                           <  1:591655/78‑1 (MQ=255)                                                                                                   cAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTCGTAGTTTTAGAAATGCTTGTTCAATGCg                                            >  1:56045/1‑141 (MQ=255)                                                                                                    aGTTATGCGTGGTGCAGTTGCAATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTAATGAGATATTCATAACTACGGCTAGTAGTTTTTTTATGCGCTATATTATTGGAGTTTTGGAAATGAGTGTTCTATGCGt                                           >  2:86475/1‑141 (MQ=255)                                                                                                     gTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGtt                                          <  1:609555/141‑1 (MQ=255)                                                                                                             tGGTACAGTTGCTCTTAAACCTTTAAAATAAAAGAACTGCTAGCTGAACTGATCTGCGCTCTTCATCACTACGGCTACCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCt                                  <  1:74765/141‑1 (MQ=255)                                                                                                             tGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCt                                  <  2:655684/141‑1 (MQ=255)                                                                                                             tGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCt                                  <  2:494768/141‑1 (MQ=255)                                                                                                              ggTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCtt                                 <  1:170569/141‑1 (MQ=255)                                                                                                               gTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCGGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCttt                                >  1:676825/1‑141 (MQ=255)                                                                                                                tACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTa                               <  2:546681/141‑1 (MQ=255)                                                                                                                     ttGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGcc                          >  2:552697/1‑141 (MQ=255)                                                                                                                     ttGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGAcc                          >  1:63930/1‑141 (MQ=255)                                                                                                                          aTTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCa                     >  1:68382/1‑141 (MQ=255)                                                                                                                                  tttAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACAttt             >  2:479048/1‑141 (MQ=255)                                                                                                                                    taaaataaaaGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCATTGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCt           >  2:534648/1‑141 (MQ=255)                                                                                                                                    taaaataaaaGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTTCGGCCACCCATAACATTTCt           >  2:241658/1‑141 (MQ=255)                                                                                                                                    taaaataaaaGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCt           <  1:434463/141‑1 (MQ=255)                                                                                                                                    taaaataaaaGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCt           <  1:434451/141‑1 (MQ=255)                                                                                                                                    taaaataaaaGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCt           >  1:246144/1‑141 (MQ=255)                                                                                                                                    taaaataaaaGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTGTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCt           >  1:93990/1‑141 (MQ=255)                                                                                                                                       aataaaataaCGGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTGGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTAcc        <  2:266809/141‑1 (MQ=255)                                                                                                                                       aataaaaGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGTGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTAcc        >  2:217344/1‑141 (MQ=255)                                                                                                                                       aataaaaGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTAcc        <  1:232965/141‑1 (MQ=255)                                                                                                                                          aaaaaaactgctagccgtagttatgaatatctcataacatttcagctagcagttcttttattttaaaggtttaatagcaactgtaccacgcataactgtaattaattgttctttgtcattcttaatttttatatcccatac     >  2:327725‑M1/1‑4 (MQ=255)                                                                                                                                          aaaaaaactgctagccgtagttatgaatatctcataacatttcagctagcagttcttttattttaaaggtttaatagcaactgtaccacgcataactgtaattaattgttctttgtcattcttaatttttatatcccatac     <  2:157113‑M1/141‑138 (MQ=255)                                                                                                                                          aaaaGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCaaa     <  1:370931/141‑1 (MQ=255)                                                                                                                                           aaaGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAAt    >  2:11140/1‑141 (MQ=255)                                                                                                                                           aaaGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAAt    >  1:551517/1‑141 (MQ=255)                                                                                                                                           aaaGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAAt    >  1:275184/1‑141 (MQ=255)                                                                                                                                             aaaactgctagccgtagttatgaatatctcataacatttcagctagcagttcttttattttaaaggtttaatagcaactgtaccacgcataactgtaattaattgttctttgtcattcttaatttttatatcccatacatg  <  2:386819‑M1/141‑141 (MQ=255)                                                                                                                                             |                                                                                                                                             AGATGGTCGTGTTACTGCGACAGCTGAAATTATTCATCGAGGTAAGTCGACACATGTATGGGATATAAAAATTAAGAATGACAAAGAACAATTAATTACAGTTATGCGTGGTACAGTTGCTATTAAACCTTTAAAATAAAAGAACTGCTAGCTGAAATGTTATGAGATATTCATAACTACGGCTAGCAGTTTTTTTATGCGCTATATTGTTGTAGTTTTAGAAATGCTTGTTCAATGCGTTCGGCAGCTTTACGGCCACCCATAACATTTCTACCAAATGG  >  CP000730/940681‑940961

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.