New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	2088022 =	64 (0.980)	7 (0.120)	5/224	NT	12.1%	intergenic (+39/+1041)	chp/sak	chemotaxis inhibitory protein CHIPS/staphylokinase
	?	CP000730	2088070 =	46 (0.810)					intergenic (+87/+993)	chp/sak	chemotaxis inhibitory protein CHIPS/staphylokinase

CTAGGTAAAATGTATAAAACATACTTCTTTAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGT  >  CP000730/2087885‑2088159                                                                                                                                          |                                                                                                                                            tattgcattaatggctatagatggattacttatatggctaatagtggacaacgtcgttatatagcgacaggagaggtagacaaggcaggtaatagaataagcagttttggtaagtttagtgcagtttgataattagatata                                                                                                                                          >  2:556773‑M1/138‑141 (MQ=255)  attgcattaatggctatagatggattacttatattgctaatagtggacaacgtcgttatatagcgacaggagaggtagacaaggcaggtaatagaataagcagttttggtaagtttagtgcagtttgataattagatatat                                                                                                                                         >  2:402983‑M1/137‑141 (MQ=255)    tgcattaatggctatagatggattacttatattgctaatagtggacaacgtcgttatatagcgacaggagaggtagacaaggcaggtaatagaataagcagttttggtaagtttagtgcagtttgataattagaTATATaa                                                                                                                                       <  2:468292‑M1/7‑1 (MQ=255)     gTAAAATGTATAAAACATACTTCTTTAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATaaa                                                                                                                                      >  1:501506/1‑141 (MQ=255)     gTAAAATGTATAAAACATACTTCTTTAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATaaa                                                                                                                                      >  1:151654/1‑141 (MQ=255)         aaTGTATAAAACATACTTCTTTAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGtt                                                                                                                                  >  2:32810/1‑141 (MQ=255)           atggctatagatggattacttatattgctaatagtggacaacgtcgttatatagcgacaggagaggtagacaaggcaggtaatagaataagcagttttggtaagtttagtgcagtttgataattagaTATATAAAGGTTTg                                                                                                                                >  2:543518‑M1/128‑141 (MQ=255)            tggctatagatggattacttatattgctaatagtggacaacgtcgttatatagcgacaggagaggtagacaaggcaggtaatagaataagcagttttggtaagtttagtgcagtttgataattagaTATATAAAGGTTTgg                                                                                                                               <  1:119271‑M1/15‑1 (MQ=255)             tataAAACATACTTCTTTAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGc                                                                                                                              >  2:21870/1‑141 (MQ=255)              ataAAACATACTTCTTTAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCa                                                                                                                             <  2:524162/141‑1 (MQ=255)                     atggattacttatattgctaatagtggacaacgtcgttatatagcgacaggagaggtagacacggcaggtaatagaataagcagttttggtaagtttagtgcagtttgataattagaTATATAAAGGTTTGGCA‑GACAttt                                                                                                                     >  2:416230‑M1/118‑141 (MQ=255)                      tACTTCTTTAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTc                                                                                                                    <  1:311121/141‑1 (MQ=255)                          ttacttatattgctaatagtggacaacgtcgttatatagcgacaggagaggtagacaaggcaggtaatagaataagcagttttggtaagtttagtgcagtttgataattagaTATATAAAGGTTTGGCA‑GACATTTCATaa                                                                                                                >  2:607631‑M1/113‑141 (MQ=255)                          ttacttatattgctaatagtggacaaagtcgttatatagcgacaggagaggtagacaaggcaggtaatagaataagcagttttggtaagtttagtgcagtttgataattagaTATATAAAGGTTTGGCA‑GACATTTCATaa                                                                                                                >  2:621328‑M1/113‑141 (MQ=255)                          tcttTAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATaa                                                                                                                >  2:184907/1‑141 (MQ=255)                          tcttTAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATaa                                                                                                                >  1:212386/1‑141 (MQ=255)                           cttTAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAAc                                                                                                               <  2:400713/141‑1 (MQ=255)                            tttAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCaagttatgaaatgtc                                                                                                               <  1:480252/141‑15 (MQ=255)                            ttgaaaaaaGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAAGTAATGAATATGCATACTAATAGTAGGAACATATATGAAAAGGTAGATATTTCTTTTGTATATAAAGGTTTGGCA‑GACATTTCATAACt                                                                                                              <  2:719285/138‑1 (MQ=255)                              tAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑Tg                                                                                                           <  1:593357/141‑1 (MQ=255)                                ttagggtagagTCTAAATCATTTTATGTAATAAAAAAAAAAAAAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGcc                                                                                                         <  2:760073/134‑1 (MQ=255)                                aaaaaGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGcc                                                                                                         >  2:658983/1‑141 (MQ=255)                                aaaaaGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGcc                                                                                                         <  1:221851/141‑1 (MQ=255)                                       agagTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCtt                                                                                                  <  1:154268/141‑1 (MQ=255)                                         agTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTta                                                                                                <  1:286320/141‑1 (MQ=255)                                         agTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTta                                                                                                <  1:105700/141‑1 (MQ=255)                                          gTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAGTAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTtat                                                                                               >  1:693701/1‑141 (MQ=255)                                          gTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTtatata                                                                                                                                        <  1:588085/102‑1 (MQ=255)                                          gTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTtatata                                                                                                                                        >  2:588085/1‑102 (MQ=255)                                               aaTCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATc                                                                                          >  1:200986/1‑141 (MQ=255)                                                 tcatcTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTa                                                                                        <  1:752014/141‑1 (MQ=255)                                                  catcTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTaa                                                                                       >  1:145391/1‑141 (MQ=255)                                                  catcTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTaa                                                                                       >  1:145418/1‑141 (MQ=255)                                                         tGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCaa                                                                                >  2:288541/1‑141 (MQ=255)                                                           taattaatGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAAc                                                                              <  2:530865/141‑1 (MQ=255)                                                           taattaatGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAAc                                                                              <  2:1650/141‑1 (MQ=255)                                                               taatGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCa                                                                          <  1:44999/141‑1 (MQ=255)                                                                aatGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCAc                                                                         >  2:505629/1‑141 (MQ=255)                                                                aatGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCAc                                                                         >  1:133765/1‑141 (MQ=255)                                                                 atGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACt                                                                        <  1:231675/141‑1 (MQ=255)                                                                 atGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACt                                                                        <  2:538817/141‑1 (MQ=255)                                                                   ggTCCTGGAAAAACTAATGTATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTaa                                                                      <  1:386909/141‑1 (MQ=255)                                                                   ggTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTaa                                                                      <  1:155527/141‑1 (MQ=255)                                                                   ggTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTaa                                                                      >  1:514781/1‑141 (MQ=255)                                                                     tCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAAc                                                                    >  1:476717/1‑141 (MQ=255)                                                                       cTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACtt                                                                  <  2:104544/141‑1 (MQ=255)                                                                       cTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTCATATATCTAATTATCAAACTGCACTAAACtt                                                                  >  2:476116/1‑141 (MQ=255)                                                                             aaaCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCaaa                                                            <  2:161307/141‑1 (MQ=255)                                                                                cTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACt                                                         >  1:327399/1‑141 (MQ=255)                                                                                  aaTGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATTTTTTTTTTTGGCA‑GACATTTCATAACT‑TGCCAAACTTTTATATATCTAATTATTAAACTGCACTAAACTTACCAAAACTGc                                                       >  2:549106/1‑141 (MQ=255)                                                                                   aTGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTTTTTTTTTTTTTGGCA‑GACATTTCATAACT‑TGCCAATCTTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCt                                                      >  2:336573/1‑141 (MQ=38)                                                                                   aTGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTATGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTgta                                                      >  1:583203/1‑139 (MQ=255)                                                                                    tGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCtt                                                     <  1:713966/141‑1 (MQ=255)                                                                                    tGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCtt                                                     >  2:767640/1‑141 (MQ=255)                                                                                    tGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCtt                                                     <  1:258537/141‑1 (MQ=255)                                                                                      aaTATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTAt                                                   <  2:773656/141‑1 (MQ=255)                                                                                          tGCATACTAATAGTAGTCACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGACTGGCA‑GACGTTTCATAAGG‑GGCCATACCTTTAGAGATCTAATTATCAAACTGCACTAAACTTACCAAAACTTCTTATTCTa                                               >  1:664590/1‑141 (MQ=37)                                                                                           gCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTAt                                              >  2:257423/1‑141 (MQ=255)                                                                                            cATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTAtt                                             <  2:102660/141‑1 (MQ=255)                                                                                            cATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTAtt                                             >  1:239909/1‑141 (MQ=255)                                                                                              tACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTAc                                           <  1:393111/141‑1 (MQ=255)                                                                                                cTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATGATCAAACTGCACTAAACTTACCAGAACTGCTTATTCTATTACCt                                         <  2:244380/141‑1 (MQ=255)                                                                                                  aaTAGGAGTTACATAAATTAAAAGGTAAATATTTCTTTTTTATATAAATGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTgt                                       <  1:747080/141‑2 (MQ=255)                                                                                                      gtagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTg                                   >  2:757220/1‑141 (MQ=255)                                                                                                      cagttttggtaagtttagtgcagtttgataattagaTATATAAAGGTTTGGCAAGTTATGAAATGTCT‑‑GCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCt                                     >  1:311174‑M1/37‑139 (MQ=255)                                                                                                      cagttttggtaagtttagtgcagtttgataattagaTATATAAAGGTTTGGCAAGTTATGAAATGTCT‑‑GCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCt                                     <  2:311174‑M1/103‑1 (MQ=255)                                                                                                        agtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATCTCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTc                                 >  2:759436/1‑141 (MQ=255)                                                                                                              gtaagtttagtgcagtttgataattagaTATATAAAGGTTTGGCAAGTTATGAAATGTCT‑‑GCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACctc                           <  2:129091‑M1/113‑1 (MQ=255)                                                                                                              gtaagtttagtgcagtttgataattagaTATATAAAGGTTTGGCA‑‑AGTTATGAAATGTCTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACctc                           <  1:342117‑M1/113‑1 (MQ=255)                                                                                                              aTAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACctc                           <  1:21870/141‑1 (MQ=255)                                                                                                                  aTTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTcc                        <  2:783923/140‑1 (MQ=255)                                                                                                                  aTTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTcc                        >  1:783923/1‑140 (MQ=255)                                                                                                                   ttAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCtt                      >  2:694616/1‑140 (MQ=255)                                                                                                                       aaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGc                  >  1:696219/1‑141 (MQ=255)                                                                                                                             gATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGTtatata            <  2:535707/141‑1 (MQ=255)                                                                                                                                    cTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGt     <  1:213954/141‑1 (MQ=255)                                                                                                                                       ttttATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGt  <  2:11471/141‑1 (MQ=255)                                                                                                                                          |                                                                                                                                            CTAGGTAAAATGTATAAAACATACTTCTTTAAAAAAGGAGAGTCTAAATCATCTTATGTAATTAATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCA‑GACATTTCATAACT‑TGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTCGCTATATAACGACGTTGT  >  CP000730/2087885‑2088159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.