New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2121978	0 (0.000)	6 (0.100)	4/244	NT	100%	coding (132/177 nt)	USA300HOU_1999	hypothetical bacteriophage protein
	?	CP000730	= 2122008	NA (NA)					coding (102/177 nt)	USA300HOU_1999	hypothetical bacteriophage protein

ATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTATCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTC  >  CP000730/2121869‑2122118                                                                                                              |                                                                                                                                             aTCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTAccaagctgacaaggtaggacttgccagtgat                                                                                                               <  2:401958‑M1/141‑32 (MQ=255) aTCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTAccaagctgacaaggtaggacttgccagtgat                                                                                                               <  2:401941‑M1/141‑32 (MQ=255)  tCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTAccaagctgacaaggtaggacttgccagtgata                                                                                                              <  1:693361‑M1/141‑33 (MQ=255)       ttttGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTTccaagctgacaaggtaggacttgccagtgataactgt                                                                                                         <  1:568184‑M1/141‑38 (MQ=255)         ttGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTAccaagctgacaaggtaggacttgccagtgataactgtca                                                                                                       <  2:562115‑M1/141‑40 (MQ=255)         ttGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTAccaagctgacaaggtaggacttgccagtgataactgtca                                                                                                       <  2:168122‑M1/141‑40 (MQ=255)                                                                                                         cAGTTAccaagctgacaaggtaggacttgccagtgataactgtcaacaaatagcaaataactataagcactatggattttaagatggataaggactatcgttattcttttcacctttaacgttaatgtcgaaatacaaaac       <  1:127358‑M1/141‑136 (MQ=255)                                                                                                            ttAccaagctgacaaggtaggacttgccagtgataactgtcaacaaatagcaaataactataagcactatggattttaagatggataaggactatcgttattcttttcacctttaacgttaatgtcgaaatacaaaacatg    >  1:188205‑M1/1‑3 (MQ=255)                                                                                                              accaagctgacaaggtaggacttgccagtgataactgtcaacaaatagcaaataactataagcactatggattttaagatggataaggactatcgttattcttttcacctttaacgttaatgtcgaaatacaaaacatgat  >  2:350764‑M1/1‑1 (MQ=255)                                                                                                              accaagctgacaaggtaggacttgccagtgataactgtcaacaaatagcaaataactataagcactatggattttaagatggataaggactatcgttattcttttcacctttaacgttaatgtcgaaatacaaaacatgat  >  1:391074‑M1/1‑1 (MQ=255)                                                                                                              aTCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATtc  <  1:672884/141‑1 (MQ=32)                                                                                                              aTCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATtc  >  2:418748/1‑141 (MQ=32)                                                                                                              |                                                                                                                                             ATCATGTTTTGTATTTCGACATTAACGTTAAAGGTGAAAAGAATAACGATAGTCCTTATCCATCTTAAAATCCATAGTGCTTATAGTTATTTGCTATTTGTTGACAGTTATCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTC  >  CP000730/2121869‑2122118

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.