New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 2121978	0 (0.000)	6 (0.100)	4/244	NT	100%	coding (132/177 nt)	USA300HOU_1999	hypothetical bacteriophage protein
	?	CP000730	= 2122008	NA (NA)					coding (102/177 nt)	USA300HOU_1999	hypothetical bacteriophage protein

ATCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGATGTTTGTTTTTCTCCTAA  >  CP000730/2121978‑2122148                               |                                                                                                                                             aTCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATtc                                <  1:672884/141‑1 (MQ=32) aTCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATtc                                >  2:418748/1‑141 (MQ=32)  tCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATtcc                               <  1:764087/141‑1 (MQ=32)  tCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATtcc                               <  1:736451/141‑1 (MQ=32)  tCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATtcc                               <  2:272351/141‑1 (MQ=32)   cACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATtcct                              >  2:570693/1‑141 (MQ=32)   cACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATtcct                              <  2:129769/141‑1 (MQ=32)    aCTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATtcctc                             >  2:95054/1‑141 (MQ=32)    aCTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATtcctc                             >  1:339054/1‑141 (MQ=32)           aGTCCTACCTTGTCAGCTTGGTAACTGTATTGAGTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTaa                      >  1:409771/1‑141 (MQ=17)            gTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAg                     <  2:274447/141‑1 (MQ=32)               cTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGAtg                  <  1:619207/141‑1 (MQ=35)                 aCCTTGTCAGCTTGGTAACTGTATTGCTTATTTTCTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGAtgtt                >  2:179202/1‑141 (MQ=21)                 aCCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGAtgtt                >  1:574254/1‑141 (MQ=35)                 aCCTTGTCAGCTTGGTAACTGTATTGATTATTTACCTCATGGATTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGAtgtt                >  1:573909/1‑141 (MQ=255)                  ccTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGAtgttt               <  2:585762/141‑1 (MQ=35)                         aGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGATGTTTGTTTTtc        <  1:585864/141‑1 (MQ=255)                          gCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGATGTTTGTTTTtct       >  1:457871/1‑141 (MQ=255)                          gCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGATGTTTGTTTTtct       >  1:299809/1‑141 (MQ=40)                              ggTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGATGTTTGTTTTTCTCCTa   <  2:567027/141‑1 (MQ=255)                               gTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGATGTTTGTTTTTCTCCTaa  <  2:124656/141‑1 (MQ=255)                               |                                                                                                                                             ATCACTGGCAAGTCCTACCTTGTCAGCTTGGTAACTGTATTGATTATTTACTTCATTTACTAATCGATTCCATTCGTCTCTTGGTATATCTTCAAGAAGTAAGAGAATCATCTTTAATTTTTCTTCGTTCATTTGTTATTCCTCCTTTTAAGATGTTTGTTTTTCTCCTAA  >  CP000730/2121978‑2122148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.