New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 961264	50 (0.770)	3 (0.050)	3/246	NT	6.0%	coding (84/525 nt)	spsA	Sec family Type I general secretory pathway S26 family signal peptidase I
	?	CP000730	= 961290	47 (0.760)					coding (110/525 nt)	spsA	Sec family Type I general secretory pathway S26 family signal peptidase I

CATTTTATGGGATCGAAAAAGGAGTGACATCGTGAAAAAAGTTGTAAAATATTTGATTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTGATATCATTACATATAGGCGTGGTAACGAGATATATACTAGTCGAATTATTGCCAAACCTGGTCAAT  >  CP000730/961150‑961430                                                                                                                                             |                                                                                                                                             cATTTTATGGGATCGAAAAAGGAGTGACATCGTGAAAAAAGTTGTAAAATATTTGATTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTc                                                                                                                                              >  1:395001/1‑141 (MQ=255)      tATGGGATCGAAAAAGGAGTGACATCGTGAAAAAAGTTGTAAAATATTTGATTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCaccaa                                                                                                                                         <  1:349447‑M2/141‑6 (MQ=255)            aTCGAAAAAGGAGTGACATCGTGAAAAAAGTTGTAAAATATTTGATTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTa                                                                                                                                   >  2:392892/1‑141 (MQ=255)                       ggTGACATCGTGAAAAAAGTTGTAAAATATTTGATTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTGGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGAt                                                                                                                        <  2:81898/140‑1 (MQ=255)                        gTGACATCGTGAAAAAAGTTGTAAAATATTTGATTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATc                                                                                                                       <  2:735282/141‑1 (MQ=255)                         tGACATAGTGAAAAAAGTTGTAATATATTTGTTTTTTTCGAGACGTGCTAGTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCg                                                                                                                      <  1:350580/141‑1 (MQ=255)                         aaacaaaaagAAAAAAGTTGTAAAATATTTGATTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCg                                                                                                                      <  2:414761/132‑1 (MQ=255)                           aCATCGTGAAAAAAGTTGTAAAATATTTGATTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCgtg                                                                                                                    <  2:311765/141‑1 (MQ=255)                           aCATCGTAAAAAAAGTTGTAAAATATTTGATTTCATTTATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATTATATGTCACCAACCCTTAACAAAGGGGATCgtg                                                                                                                    <  2:28189/141‑1 (MQ=255)                                  gAAAAAAGTTGTAAAATATTTGATTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGt                                                                                                             >  2:289981/1‑141 (MQ=255)                                      aaaGTTGTAGAATATTTGATTTCATTGATACTTGATATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGGCATGTCATTCAGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGtaaat                                                                                                         <  2:430059/141‑1 (MQ=255)                                      aaaGTTGTAAAATATTTGATTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGtaaat                                                                                                         >  1:460178/1‑141 (MQ=255)                                            gTAAAATATTTGATTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAAtt                                                                                                   >  1:262327/1‑141 (MQ=255)                                             tAAAATATTTGATTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTa                                                                                                  <  1:186456/141‑1 (MQ=255)                                             tAAAATATTTGATTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTa                                                                                                  >  2:102087/1‑141 (MQ=255)                                              aaaaTATTTGATTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTaa                                                                                                 >  1:382492/1‑141 (MQ=255)                                                 atatTTGATTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGt                                                                                              <  2:23728/141‑1 (MQ=255)                                                   atTGGATTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAAATAAAGTTa                                                                                            >  1:363234/1‑141 (MQ=255)                                                      tGATTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACAt                                                                                         <  2:108884/141‑1 (MQ=255)                                                      tGATTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACAt                                                                                         <  2:108763/141‑1 (MQ=255)                                                      tGATTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTATGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACAt                                                                                         >  2:136014/1‑141 (MQ=255)                                                        aTTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACAttt                                                                                       <  1:88022/141‑1 (MQ=255)                                                        aTTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACAttt                                                                                       >  2:727921/1‑141 (MQ=255)                                                        aTTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACAttt                                                                                       >  1:400242/1‑141 (MQ=255)                                                        aTTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACAttt                                                                                       >  2:727515/1‑141 (MQ=255)                                                        aTTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACAtta                                                                                       >  2:745831/1‑140 (MQ=255)                                                             aTTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCa                                                                                  >  2:174448/1‑141 (MQ=255)                                                               tGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAAt                                                                                >  2:107456/1‑141 (MQ=255)                                                                 aTACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTg                                                                              <  2:215241/141‑1 (MQ=255)                                                                 aTACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTg                                                                              >  2:154415/1‑141 (MQ=255)                                                                       gCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGaataat                                                                        <  1:56906/141‑1 (MQ=255)                                                                       gCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGCCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGaataat                                                                        >  2:500770/1‑141 (MQ=255)                                                                          attatCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGt                                                                     <  2:436557/141‑1 (MQ=255)                                                                                    tACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTGATATCATTa                                                           <  1:784573/141‑1 (MQ=255)                                                                                      cgaacagtccAAACTCTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTCACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTCATATCATTACa                                                         >  2:101021/10‑141 (MQ=255)                                                                                       tGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTGATATCATTACat                                                        >  2:261200/1‑141 (MQ=255)                                                                                         ttCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTGATATCATTACatat                                                      >  2:585338/1‑141 (MQ=255)                                                                                             tACAAACTTTTGTAATNGTTGGTCATGTCATTCCGAATAATGATATGTCaccaactattacaaaagtttgtacgaacagtacaatgataatagcaagtatcaatgaaatcaaatattttacaacttttttcacgatgtcac                                                  <  1:739292‑M2/141‑93 (MQ=255)                                                                                                      ttGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTGATATCATTACATATAGGCGTGGTAACg                                         <  2:419905/141‑1 (MQ=255)                                                                                                      ttGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTGATATCATTACATATAGGCGTGGTAACg                                         >  2:140278/1‑141 (MQ=255)                                                                                                       tGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTGATATCATTACATATAGGCGTGGTAACga                                        <  1:31176/141‑1 (MQ=255)                                                                                                         tAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTGATATCATTACATATAGGCGTGGTAACgaga                                      <  1:174581/141‑1 (MQ=255)                                                                                                         tAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTGATATCATTACATATAGGCGTGGTAACgaga                                      >  2:440584/1‑141 (MQ=255)                                                                                                            tAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTGATATCATTACATATAGGCGTGGTAACGAGatat                                   <  1:614631/141‑1 (MQ=255)                                                                                                               ttGGTCATGTCATTCCGAATAATGATATGTCaccaactattacaaaagtttgtacgaacagtacaatgataatagcaagtatcaatgaaatcaaatattttacaacttttttcacgatgtcactcctttttcgatcccata                                <  1:676506‑M2/141‑111 (MQ=255)                                                                                                               ttGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTGATATCATTACATATAGGCGTGGTAACGAGAtatata                                <  1:300219/141‑1 (MQ=255)                                                                                                                tGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTGATATCAATACATATAGGCGTGGTAACGAGATATATAc                               <  2:706963/141‑1 (MQ=255)                                                                                                                          atTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTGATATCATTACATATAGGCGTGGTAACGAGATATATACTAGTCGAatt                     >  2:5961/1‑141 (MQ=255)                                                                                                                            tCCGAATAATGATATG‑ccaactattacaaaagtttgtacgaacagtacaatgataatagcaagtatcaatgaaatcaaatattttacaacttttttcacgatgtcactcctttttcgatcccataaaatgctgttctaac                   <  2:637579‑M2/141‑125 (MQ=255)                                                                                                                              cGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTGATATCATTACATATAGGCGTGGTAACGAGATATATACTAGTCGAATTATTg                 <  1:387619/141‑1 (MQ=255)                                                                                                                              cGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTGATATCATTACATATAGGCGTGGTAACGAGATATATACTAGTCGAATTATTg                 <  1:693352/141‑1 (MQ=255)                                                                                                                                     tGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTGATATCATTACATATAGGCGTGGTAACGAGATATATACTAGTCGAATTATTGCCAAAcc          >  1:78862/1‑141 (MQ=255)                                                                                                                                       atatGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTGATATCATTACATATAGGCGTGGTAACGAGATATATACTAGTCGAATTATTGCCAAACCTg        <  1:693303/141‑1 (MQ=255)                                                                                                                                         atGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTGATATCATTACATATAGGCGTGGTAACGAGATATATACTAGTCGAATTATTGCCAAACCTGGt      >  1:181856/1‑141 (MQ=255)                                                                                                                                         atGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTGATATCATTACATATAGGCGTGGTAACGAGATATATACTAGTCGAATTATTGCCAAACCTGGt      <  2:40021/141‑1 (MQ=255)                                                                                                                                           gTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTGATATCATTACATATAGGCGTGGTAACGAGATATATACTAGTCGAATTATTGCCAAACCTGGtca    <  2:435824/141‑1 (MQ=255)                                                                                                                                             cACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTGATATCATTACATATAGGCGTGGTAACGAGATATATACTAGTCGAATTATTGCCAAACCTGGtcaat  >  2:592778/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                             CATTTTATGGGATCGAAAAAGGAGTGACATCGTGAAAAAAGTTGTAAAATATTTGATTTCATTGATACTTGCTATTATCATTGTACTGTTCGTACAAACTTTTGTAATAGTTGGTCATGTCATTCCGAATAATGATATGTCACCAACCCTTAACAAAGGGGATCGTGTTATTGTAAATAAAATTAAAGTTACATTTAATCAATTGAATAATGGTGATATCATTACATATAGGCGTGGTAACGAGATATATACTAGTCGAATTATTGCCAAACCTGGTCAAT  >  CP000730/961150‑961430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.