New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1283492	42 (0.640)	3 (0.050)	3/236	NT	6.8%	coding (51/4311 nt)	dnaE1	DNA‑directed DNA polymerase III alpha subunit
	?	CP000730	= 1283506	44 (0.740)					coding (65/4311 nt)	dnaE1	DNA‑directed DNA polymerase III alpha subunit

TACTATGCTCACATAATCTAAATATTGTTCGAACACGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAGATTATTTATTATTTATAAATGCAATAGAGCAAGAGTTTA  >  CP000730/1283366‑1283646                                                                                                                                             |                                                                                                                                             tACTATGCTCACATAATCTAAATATTGTTCGAACACGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGc                                                                                                                                              <  1:385362/141‑1 (MQ=255)  aCTATGCTCACATAATCTAAATATTGTTCGAACACGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCt                                                                                                                                             >  2:107001‑M2/1‑140 (MQ=255)    tATGCTCACATAATCTAAATATTGTTCGAACACGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCtga                                                                                                                                           >  1:320940‑M2/1‑138 (MQ=255)      tGCTCACATAATCTAAATATTGTTCGAACACGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGTCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTCGATGCtgaaa                                                                                                                                         <  1:714736‑M2/141‑6 (MQ=255)      tGCTCACATAATCTAAATATTGTTCGAACACGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCtgaaa                                                                                                                                         <  1:131277‑M2/141‑6 (MQ=255)       gCTCACATAATCTAAATATTGTTCGAACACGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCtgaaat                                                                                                                                        >  2:32003‑M2/1‑135 (MQ=255)        cTCACATAATCTAAATATTGTTCGAACACGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCtgaaatt                                                                                                                                       <  2:322058‑M2/141‑8 (MQ=255)         tCACATAATCTAAATATTGTTCGAACACGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCtgaaattt                                                                                                                                      >  1:245290‑M2/1‑133 (MQ=255)           acaTAATCTAAATATTGTTCGAACACGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCtgaaatttta                                                                                                                                    >  1:583665‑M2/1‑131 (MQ=255)                aTCTAAATATTGTTCGAACACGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTc                                                                                                                               <  2:50446/141‑1 (MQ=255)                     aaTATTGTTCGAACACGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGTTGCTGAAATTTTAAATTCAGGTg                                                                                                                          <  2:630917/141‑1 (MQ=255)                           gTTCGAACACGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGa                                                                                                                    >  1:476120/1‑141 (MQ=255)                           gTTCGAACACGTAAAAGTAATTTCTATCTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATAAGATGCTGAAATTTTAAATTCAGGTGAACTGa                                                                                                                    >  2:456445/1‑141 (MQ=255)                                 acacGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGta                                                                                                              >  2:135899/1‑141 (MQ=255)                                    cGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAg                                                                                                           <  2:343115/141‑1 (MQ=255)                                     gTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGa                                                                                                          >  2:51371/1‑141 (MQ=255)                                         aaGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGtt                                                                                                      <  2:327896/141‑1 (MQ=255)                                            tAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTCCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCt                                                                                                   >  2:662576/1‑141 (MQ=255)                                              aTTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTaa                                                                                                 >  1:148520/1‑141 (MQ=255)                                                ttCTATTNAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTTAAATTTTAAATTCAGGTGAACTGACACGTCTAGATGTTTCTAACa                                                                                               <  2:591426/141‑1 (MQ=255)                                                 tCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCGTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACaa                                                                                              <  1:414092/141‑1 (MQ=255)                                                         aGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGaa                                                                                      >  1:456181/1‑141 (MQ=255)                                                          ggtggtAATTGTCTTGGCAATGACAGAGAAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAAc                                                                                     <  2:572495/141‑1 (MQ=255)                                                                 aTTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGaa                                                                              <  1:319954/141‑1 (MQ=255)                                                                    gTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAAttt                                                                           >  2:565488/1‑141 (MQ=255)                                                                       ttGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCat                                                                        >  1:293804/1‑141 (MQ=255)                                                                       ttGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCat                                                                        >  2:200550/1‑141 (MQ=255)                                                                         ggCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCatat                                                                      >  1:174026/1‑141 (MQ=255)                                                                          gCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATatt                                                                     <  2:582915/141‑1 (MQ=255)                                                                          gCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATatt                                                                     <  2:382056/141‑1 (MQ=255)                                                                               gACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATattacatt                                                                <  1:73093/141‑1 (MQ=255)                                                                                  agagCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTAcc                                                             <  1:322058/141‑1 (MQ=255)                                                                                  agagCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTAcc                                                             <  1:55521/141‑1 (MQ=255)                                                                                    agCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACcac                                                           <  2:476120/141‑1 (MQ=255)                                                                                        acaaAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAAtt                                                       <  1:783271/141‑1 (MQ=255)                                                                                            aaaTTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTa                                                   >  1:530798/1‑141 (MQ=255)                                                                                             aaTTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAg                                                  >  2:119984/1‑141 (MQ=255)                                                                                              aTTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGc                                                 >  1:696279/1‑141 (MQ=255)                                                                                               tttAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCt                                                >  1:571330/1‑141 (MQ=255)                                                                                                   aaGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATg                                            >  2:163394/1‑141 (MQ=255)                                                                                                   aaGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATg                                            >  1:288901/1‑141 (MQ=255)                                                                                                    aGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTGCCACAATTCTTAGCTCATGa                                           >  1:286004/1‑141 (MQ=255)                                                                                                        cttgctGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAGat                                       <  2:772001/141‑1 (MQ=255)                                                                                                           gctGATCAAGTTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAGattat                                    >  2:698093/1‑141 (MQ=255)                                                                                                            ctGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAGattatt                                   <  1:79422/141‑1 (MQ=255)                                                                                                             tGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAGattattt                                  <  1:773866/141‑1 (MQ=255)                                                                                                                tCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAGattatttatt                               <  1:383404/141‑1 (MQ=255)                                                                                                                     ttAAAATTTCAAATCAATTAGATGCtgaaattttaaattgatcagcaagcactttaaatttttgttgctctgtcattgccaagacaattaccaccttaaatagaaattacttttacgtgttcgaacaatatttagattatg                          <  1:40626‑M2/141‑117 (MQ=255)                                                                                                                        aaaTTTCAAATCAATTAGATGCtgaaattttaatttgatcagcaagcactttaaatttttgttgc                                                                                                   >  1:586225‑M2/1‑22 (MQ=255)                                                                                                                        aaaTTTCAAATCAATTAGATGCtgaaattttaatttgatcagcaagcactttaaatttttgttgc                                                                                                   <  2:586225‑M2/65‑44 (MQ=255)                                                                                                                          aTTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAGATTATTTATTATTTATAAAt                     <  2:148520/141‑1 (MQ=255)                                                                                                                             tCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAGATTATTTATTATTTATAAATGCa                  >  2:192419/1‑141 (MQ=255)                                                                                                                              cAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAGATTATTTATTGTTTATAAATGCaa                 >  1:126549/1‑141 (MQ=255)                                                                                                                                aaTCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAGATTATTTATTATTTATAAATGCAATa               >  2:395221/1‑141 (MQ=255)                                                                                                                                 aTCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAGATTATTTATTATTTATAAATGCAATag              <  2:56812/141‑1 (MQ=255)                                                                                                                                 aTCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGAAGTTACTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAGATTATTTATTATTTATAAATGCAATag              <  2:592309/141‑1 (MQ=255)                                                                                                                                   cAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAGATTATTTATTATTTATAAATGCAATagag            >  2:560629/1‑141 (MQ=255)                                                                                                                                         gATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAGATTATTTATTATTTATAAATGCAATAGAGCAagag      <  2:400553/141‑1 (MQ=255)                                                                                                                                             cTGAAATTTTAAATTCAGGTGAACTGACACGTCTAGGTGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAGATTATTTATTATATATAAATGCAATAGAGCAAGAGTTTa  >  2:472015/1‑141 (MQ=255)                                                                                                                                             cTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAGATTATTTATTATTTATAAATGCAATAGAGCAAGAGTTTa  >  2:347611/1‑141 (MQ=255)                                                                                                                                             |                                                                                                                                             TACTATGCTCACATAATCTAAATATTGTTCGAACACGTAAAAGTAATTTCTATTTAAGGTGGTAATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAGATTATTTATTATTTATAAATGCAATAGAGCAAGAGTTTA  >  CP000730/1283366‑1283646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.