New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000730	= 1660030	55 (0.840)	5 (0.080)	3/236	NT	8.6%	coding (1279/1464 nt)	yqgP	S54 family peptidase
	?	CP000730	= 1660054	56 (0.940)					coding (1255/1464 nt)	yqgP	S54 family peptidase

TGCATTTAATGCTTTACGCACATATTTTAATGCTTTTTCATCATCATTTAATGAACGATTTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCATTATCATAATTACCACTAGTCATATCATCT  >  CP000730/1659917‑1660184                                                                                                                                          |                                                                                                                                   tGCATTTAATGCTTTACGCACATATTTTAATGCTTTTTCATCATCATTTAATGAACGATTTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCgga                                                                                                                                 >  2:342890‑M2/1‑138 (MQ=255)   cATTTAATGCTTTACGCACATATTTTAATGCTTTTTCATCATCATTTAATGAACGATTTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCggact                                                                                                                               >  1:93730‑M2/1‑136 (MQ=255)         aTGCTTTACGCACATATTTTAATGCTTTTTCATCATCATTTAATGAACGATTTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCggacttagaat                                                                                                                         >  2:497314‑M2/1‑130 (MQ=255)              ttACGCACATATTTTAATGCTTTTTCATCATCATTTAATGAACGATTTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGAta                                                                                                                    >  2:62457/1‑141 (MQ=255)                 cGCACCTATGTTAATGCCTTTTCATCATCATTGAATGCACGATTTGCTATCGCCAGCTCAAAATTTAATAAACCTGGTTTAGGGCGCATTATAAGTCCTCTCTCCCATTCTGTCATACCTTCGGACTTAGAATTGAtagta                                                                                                                 <  2:697498/141‑1 (MQ=255)                 cGCACATATTTTAATGCTTTTTCATCATCATTTAATGAACGATTTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGAtagta                                                                                                                 >  1:19838/1‑141 (MQ=255)                 cGCACATATTTTAATGCTTTTTCATCATCATTTAATGAACGATTTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGAtagta                                                                                                                 >  1:413582/1‑141 (MQ=255)                    acaTATTTTAATGCTTTTTCATCATCATTTAATGAACGATTTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGcc                                                                                                              <  2:512072/141‑1 (MQ=255)                    acaTATTTTAATGCTTTTTCATCATCATTTAATGAACGATTTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGcc                                                                                                              <  1:406790/141‑1 (MQ=255)                     caTATTTTAATGCTTTTTCATCATCATTTAATGAACGATTTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCa                                                                                                             <  2:363686/141‑1 (MQ=255)                       tatTTTAATGCTTTTTCATCATCATTTAATGAACGATTTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATa                                                                                                           <  2:351043/141‑1 (MQ=255)                             aaTGCTTTTTCATCATCATTTAATGAACGATTTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATa                                                                                                     >  2:511368/1‑141 (MQ=255)                             aaTGCTTTTTCATCATCATTTAATGAACGATTTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATa                                                                                                     >  2:477180/1‑141 (MQ=255)                             aaTGCTTTTTCATCATCATTTAATGAACGATTTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATa                                                                                                     >  2:154619/1‑141 (MQ=255)                             aaTGCTTTTTCATCATCATTTAATGAACGATTTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATa                                                                                                     >  2:34518/1‑141 (MQ=255)                               tGCTTTTTCATCATCATTTAATGAACGATTTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATAct                                                                                                   >  1:729231/1‑140 (MQ=255)                                               tttAATGAACGATTTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGtt                                                                                   <  1:60498/141‑1 (MQ=255)                                                     gAACGATTTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAAATGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGatca                                                                             >  1:631028/1‑141 (MQ=255)                                                         gATTTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACTTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCgg                                                                         <  1:461254/141‑1 (MQ=255)                                                          aTTTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGc                                                                        <  1:306793/141‑1 (MQ=255)                                                           tttGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCa                                                                       <  2:736924/141‑1 (MQ=255)                                                            ttGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCAt                                                                      <  2:212838/141‑1 (MQ=255)                                                              gCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCAtca                                                                    >  1:363432/1‑139 (MQ=255)                                                              gCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATaa                                                                    >  2:698225/1‑141 (MQ=255)                                                              gCTATCGCTAACTCAAAATTCAATAAACCTGAGTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAAGAATATGTTTGATCAGCTACATaa                                                                    >  2:698244/1‑141 (MQ=255)                                                               cTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAt                                                                   >  1:470836/1‑141 (MQ=255)                                                               cTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAt                                                                   <  1:97335/141‑1 (MQ=255)                                                                     cTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTtttat                                                             <  1:427577/141‑1 (MQ=255)                                                                        aCTCAAANTTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTtttattta                                                          <  2:588256/141‑1 (MQ=255)                                                                         cTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTttatttat                                                         <  1:213923/141‑1 (MQ=255)                                                                         cTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGGAGTCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTttatttat                                                         <  1:214097/141‑1 (MQ=255)                                                                          tCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTtatttatt                                                        >  2:648512/1‑141 (MQ=255)                                                                           cAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTg                                                       <  2:57061/141‑1 (MQ=255)                                                                             aaaTTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTc                                                     <  1:471980/141‑1 (MQ=255)                                                                             aaaTTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTc                                                     >  1:284701/1‑141 (MQ=255)                                                                                   aataaACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTc                                               >  2:707799/1‑141 (MQ=255)                                                                                   aataaACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTc                                               >  1:374508/1‑141 (MQ=255)                                                                                    ataaACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTca                                              >  1:290763/1‑141 (MQ=255)                                                                                      aaaCCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTcaca                                            >  1:518352/1‑141 (MQ=255)                                                                                            gATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATAttt                                      <  2:574225/141‑1 (MQ=255)                                                                                                tAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAg                                  >  1:585590/1‑141 (MQ=255)                                                                                                tAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAg                                  <  2:167203/141‑1 (MQ=255)                                                                                                 aGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGc                                 >  2:594458/1‑141 (MQ=255)                                                                                                   gAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCAt                               >  1:573733/1‑141 (MQ=255)                                                                                                      aCATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCATTAt                            <  1:93598/141‑1 (MQ=255)                                                                                                      aCATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCATTAt                            <  2:45711/141‑1 (MQ=255)                                                                                                        aTTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCggacttagaatgtttcctaaatcaggtttattaaattttgagttagcgatagcaaatcgttcattaaatgatgatgaaaaagcattaaaatatgtgcgtaaagcat                          <  1:117325‑M2/141‑107 (MQ=255)                                                                                                          tCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCATTATCATa                        >  2:487186/1‑141 (MQ=255)                                                                                                           cTAAGTCCTCGCTCCCATTATGTCATACCTCCCGAAATAGAATTGATAGTCGCCATAATCATACCACTTAAATAATATGTTTGATCCTCGGAATAATTTATATTTATTGTCCGCTTAACAATGTTTTGAGCATTATCCTac                       <  2:783607/141‑2 (MQ=255)                                                                                                            tAAGTCCTCGCTCCCATTCTGTCATACCTTCggacttagaatgtttcctaaatcaggtttattaaattttgagttccagatcgcacgtagttcattacatgatgatgaaaaagcattaaaatctgtgcgtaaagcattaaa                      <  1:781794‑M2/141‑111 (MQ=255)                                                                                                            tAAGTCCTCGCTCCCATTCTGTCATACCTTCggacttagaatgtttcctaaatcaggtttattaaattttgagttagcgatagcaaatcgttcattaaatgatgatgaaaaagcattaaaatatgtgcgtaaagcattaaa                      <  2:359416‑M2/141‑111 (MQ=255)                                                                                                             aaGTCCTCGCTCCCATTCTGTCATACCTTCggacttagaatgtttcctaaatcaggtttattaaattttgagttagcgatagcaaatcgttcattaaatgatgatgaaaaagcattaaaatatgtgcgtaaagcattaaat                     <  1:355765‑M2/141‑112 (MQ=255)                                                                                                             aaGTCCTCGCTCCCATTCTGTCATACCTTCggacttagaatgtttcctaaatcaggtttattaaattttgagttagcgatagcaaatcgttcattaaatgatgatgaaaaagcattaaaatatgtgcgtaaagcattaaat                     <  1:360709‑M2/141‑112 (MQ=255)                                                                                                             aaGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCATTATCATAAtt                     <  1:498430/141‑1 (MQ=255)                                                                                                              gggacTCGCTCACATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCATTATCATAATTa                    <  2:200531/137‑1 (MQ=255)                                                                                                                   tCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCATTATCATAATTACCACt               <  1:606774/141‑1 (MQ=255)                                                                                                                      cTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCATTATCATAATTACCACTAGt            >  2:703077/1‑141 (MQ=255)                                                                                                                         ccATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCATTATCATAATTACCACTAGTCat         <  2:307089/141‑1 (MQ=255)                                                                                                                         ccATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCATTATCATAATTACCACTAGTCat         <  1:221619/141‑1 (MQ=255)                                                                                                                         ccATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCATTATCATAATTACCACTAGTCat         <  2:136922/141‑1 (MQ=255)                                                                                                                           aTTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCATTATCATAATTACCACTAGTCatat       <  2:92950/141‑1 (MQ=255)                                                                                                                           aTTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCATTATCATAATTACCACTAGTCatat       <  2:376117/141‑1 (MQ=255)                                                                                                                           aTTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCATTATCATAATTACCACTAGTCatat       <  2:190014/141‑1 (MQ=255)                                                                                                                                gTCATACCTTCGGACTTAGAATTGATAGTAGCCATCATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCATTATCATAATTACCACTAGTCATATCATCt  <  2:687461/141‑1 (MQ=255)                                                                                                                                gTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAACCAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCATTATCATAATTACCACTAGTCATATCATCt  >  2:159228/1‑141 (MQ=255)                                                                                                                                          |                                                                                                                                   TGCATTTAATGCTTTACGCACATATTTTAATGCTTTTTCATCATCATTTAATGAACGATTTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCATTATCATAATTACCACTAGTCATATCATCT  >  CP000730/1659917‑1660184

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.